Patching-based deep-learning model for the inpainting of Bragg coherent diffraction patterns affected by detector gaps.

IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Journal of Applied Crystallography Pub Date : 2024-06-18 eCollection Date: 2024-08-01 DOI:10.1107/S1600576724004163
Matteo Masto, Vincent Favre-Nicolin, Steven Leake, Tobias Schülli, Marie-Ingrid Richard, Ewen Bellec
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Abstract

A deep-learning algorithm is proposed for the inpainting of Bragg coherent diffraction imaging (BCDI) patterns affected by detector gaps. These regions of missing intensity can compromise the accuracy of reconstruction algorithms, inducing artefacts in the final result. It is thus desirable to restore the intensity in these regions in order to ensure more reliable reconstructions. The key aspect of the method lies in the choice of training the neural network with cropped sections of diffraction data and subsequently patching the predictions generated by the model along the gap, thus completing the full diffraction peak. This approach enables access to a greater amount of experimental data for training and offers the ability to average overlapping sections during patching. As a result, it produces robust and dependable predictions for experimental data arrays of any size. It is shown that the method is able to remove gap-induced artefacts on the reconstructed objects for both simulated and experimental data, which becomes essential in the case of high-resolution BCDI experiments.

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基于补丁的深度学习模型,用于对受探测器间隙影响的布拉格相干衍射图样进行润色。
本文提出了一种深度学习算法,用于对受探测器间隙影响的布拉格相干衍射成像(BCDI)图案进行内绘。这些强度缺失区域会影响重建算法的准确性,导致最终结果出现伪影。因此,最好能恢复这些区域的强度,以确保重建结果更加可靠。该方法的关键在于选择用剪切过的衍射数据部分来训练神经网络,然后将模型生成的预测结果沿着间隙进行修补,从而完成完整的衍射峰。这种方法可以获得更多的实验数据用于训练,并能在修补过程中对重叠部分进行平均处理。因此,它能对任何规模的实验数据阵列进行稳健可靠的预测。研究表明,该方法能够消除模拟数据和实验数据重建对象上由间隙引起的伪影,这在高分辨率 BCDI 实验中至关重要。
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来源期刊
CiteScore
10.00
自引率
3.30%
发文量
178
审稿时长
4.7 months
期刊介绍: Many research topics in condensed matter research, materials science and the life sciences make use of crystallographic methods to study crystalline and non-crystalline matter with neutrons, X-rays and electrons. Articles published in the Journal of Applied Crystallography focus on these methods and their use in identifying structural and diffusion-controlled phase transformations, structure-property relationships, structural changes of defects, interfaces and surfaces, etc. Developments of instrumentation and crystallographic apparatus, theory and interpretation, numerical analysis and other related subjects are also covered. The journal is the primary place where crystallographic computer program information is published.
期刊最新文献
SUBGROUPS: a computer tool at the Bilbao Crystallographic Server for the study of pseudo-symmetric or distorted structures. Characterization of sub-micrometre-sized voids in fixed human brain tissue using scanning X-ray microdiffraction. Electronic angle focusing for neutron time-of-flight powder diffractometers. Link between b.c.c.-f.c.c. orientation relationship and austenite morphology in CF8M stainless steel. In situ counter-diffusion crystallization and long-term crystal preservation in microfluidic fixed targets for serial crystallography.
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