FCSSL: fusion enhanced contrastive self-supervised learning method for parallel MRI reconstruction.

IF 3.3 3区 医学 Q2 ENGINEERING, BIOMEDICAL Physics in medicine and biology Pub Date : 2024-10-14 DOI:10.1088/1361-6560/ad6d28
Peng Ding, Jizhong Duan, Lei Xue, Yu Liu
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Abstract

Objective. The implementation of deep learning in magnetic resonance imaging (MRI) has significantly advanced the reduction of data acquisition times. However, these techniques face substantial limitations in scenarios where acquiring fully sampled datasets is unfeasible or costly.Approach. To tackle this problem, we propose a fusion enhanced contrastive self-supervised learning (FCSSL) method for parallel MRI reconstruction, eliminating the need for fully sampledk-space training dataset and coil sensitivity maps. First, we introduce a strategy based on two pairs of re-undersampling masks within a contrastive learning framework, aimed at enhancing the representational capacity to achieve higher quality reconstruction. Subsequently, a novel adaptive fusion network, trained in a self-supervised learning manner, is designed to integrate the reconstruction results of the framework.Results. Experimental results on knee datasets under different sampling masks demonstrate that the proposed FCSSL achieves superior reconstruction performance compared to other self-supervised learning methods. Moreover,the performance of FCSSL approaches that of the supervised methods, especially under the 2DRU and RADU masks, but no need for fully sample data. The proposed FCSSL, trained under the 3× 1DRU and 2DRU masks, can effectively generalize to unseen 1D and 2D undersampling masks, respectively. For target domain data that exhibit significant differences from source domain data, the proposed model, fine-tuned with just a few dozen instances of undersampled data in the target domain, achieves reconstruction performance comparable to that achieved by the model trained with the entire set of undersampled data.Significance. The novel FCSSL model offers a viable solution for reconstructing high-quality MR images without needing fully sampled datasets, thereby overcoming a major hurdle in scenarios where acquiring fully sampled MR data is difficult.

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FCSSL:用于并行磁共振成像重建的融合增强型对比自监督学习方法。
深度学习在磁共振成像(MRI)中的应用大大缩短了数据采集时间。然而,在获取全采样数据集不可行或成本高昂的情况下,这些技术面临着很大的局限性。为解决这一问题,我们提出了一种用于并行磁共振成像重建的融合增强型对比度自监督学习(FCSSL)方法,无需全采样 k 空间训练数据集和线圈灵敏度图。首先,我们在对比学习框架内引入了一种基于两对再undersampling 掩码的策略,旨在增强表征能力,实现更高质量的重建。随后,我们设计了一个以自我监督学习方式训练的新型自适应融合网络,以整合该框架的重建结果。在不同采样掩码下的膝关节数据集上的实验结果表明,与其他自监督学习方法相比,所提出的 FCSSL 实现了更优越的重建性能。此外,FCSSL 的性能接近监督方法,尤其是在 2DRU 和 RADU 掩码下。所提出的 FCSSL 在 3× 1DRU 和 2DRU 掩码下经过训练后,可以分别有效地泛化到未见的 1D 和 2D 欠采样掩码。对于与源域数据存在显著差异的目标域数据,所提出的模型只需使用目标域中几十个欠采样数据实例进行微调,就能获得与使用整组欠采样数据训练的模型相当的重建性能。新颖的 FCSSL 模型为重建高质量磁共振图像提供了一个可行的解决方案,而不需要完全采样的数据集,从而克服了在难以获得完全采样磁共振数据的情况下的一个主要障碍。
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来源期刊
Physics in medicine and biology
Physics in medicine and biology 医学-工程:生物医学
CiteScore
6.50
自引率
14.30%
发文量
409
审稿时长
2 months
期刊介绍: The development and application of theoretical, computational and experimental physics to medicine, physiology and biology. Topics covered are: therapy physics (including ionizing and non-ionizing radiation); biomedical imaging (e.g. x-ray, magnetic resonance, ultrasound, optical and nuclear imaging); image-guided interventions; image reconstruction and analysis (including kinetic modelling); artificial intelligence in biomedical physics and analysis; nanoparticles in imaging and therapy; radiobiology; radiation protection and patient dose monitoring; radiation dosimetry
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