Setting Up the JBrowse 2 Genome Browser
Colin Diesh, Robert Buels, Garrett Stevens, Caroline Bridge, Scott Cain, Lincoln Stein, Ian Holmes
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Abstract
JBrowse 2 is a modular genome browser that can visualize many common genomic file formats. While JBrowse 2 supports a variety of different usages, it is particularly suited for deployment on websites, such as model organism databases or other web-based genomic data resources. This protocol provides detailed instructions for setting up JBrowse 2 on an Ubuntu Linux web server, loading a reference genome from a FASTA format file, and adding a gene annotation track from a GFF3 format file. By the end of the protocol, users will have a working JBrowse 2 instance that is accessible via the web. © 2024 The Author(s). Current Protocols published by Wiley Periodicals LLC.
Basic Protocol: Setting up JBrowse 2 on your web server
设置 JBrowse 2 基因组浏览器
JBrowse 2 是一种模块化基因组浏览器，可将多种常见的基因组文件格式可视化。虽然 JBrowse 2 支持多种不同用途，但它特别适合部署在网站上，如模式生物数据库或其他基于网络的基因组数据资源。本协议提供了在 Ubuntu Linux 网络服务器上设置 JBrowse 2、从 FASTA 格式文件加载参考基因组以及从 GFF3 格式文件添加基因注释轨迹的详细说明。协议结束时，用户将拥有一个可通过网络访问的 JBrowse 2 实例。© 2024 作者。当前协议》由 Wiley Periodicals LLC 出版。基本协议：在网络服务器上设置 JBrowse 2。
本文章由计算机程序翻译，如有差异，请以英文原文为准。
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