Neuro-XAI: Explainable deep learning framework based on deeplabV3+ and bayesian optimization for segmentation and classification of brain tumor in MRI scans

IF 2.7 4区 医学 Q2 BIOCHEMICAL RESEARCH METHODS Journal of Neuroscience Methods Pub Date : 2024-08-10 DOI:10.1016/j.jneumeth.2024.110247
Tallha Saeed , Muhammad Attique Khan , Ameer Hamza , Mohammad Shabaz , Wazir Zada Khan , Fatimah Alhayan , Leila Jamel , Jamel Baili
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Abstract

The prevalence of brain tumor disorders is currently a global issue. In general, radiography, which includes a large number of images, is an efficient method for diagnosing these life-threatening disorders. The biggest issue in this area is that it takes a radiologist a long time and is physically strenuous to look at all the images. As a result, research into developing systems based on machine learning to assist radiologists in diagnosis continues to rise daily. Convolutional neural networks (CNNs), one type of deep learning approach, have been pivotal in achieving state-of-the-art results in several medical imaging applications, including the identification of brain tumors. CNN hyperparameters are typically set manually for segmentation and classification, which might take a while and increase the chance of using suboptimal hyperparameters for both tasks. Bayesian optimization is a useful method for updating the deep CNN's optimal hyperparameters. The CNN network, however, can be considered a "black box" model because of how difficult it is to comprehend the information it stores because of its complexity. Therefore, this problem can be solved by using Explainable Artificial Intelligence (XAI) tools, which provide doctors with a realistic explanation of CNN's assessments. Implementation of deep learning-based systems in real-time diagnosis is still rare. One of the causes could be that these methods don't quantify the Uncertainty in the predictions, which could undermine trust in the AI-based diagnosis of diseases. To be used in real-time medical diagnosis, CNN-based models must be realistic and appealing, and uncertainty needs to be evaluated. So, a novel three-phase strategy is proposed for segmenting and classifying brain tumors. Segmentation of brain tumors using the DeeplabV3+ model is first performed with tuning of hyperparameters using Bayesian optimization. For classification, features from state-of-the-art deep learning models Darknet53 and mobilenetv2 are extracted and fed to SVM for classification, and hyperparameters of SVM are also optimized using a Bayesian approach. The second step is to understand whatever portion of the images CNN uses for feature extraction using XAI algorithms. Using confusion entropy, the Uncertainty of the Bayesian optimized classifier is finally quantified. Based on a Bayesian-optimized deep learning framework, the experimental findings demonstrate that the proposed method outperforms earlier techniques, achieving a 97 % classification accuracy and a 0.98 global accuracy.

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Neuro-XAI:基于 DeeplabV3+ 和贝叶斯优化的可解释深度学习框架,用于磁共振成像扫描中脑肿瘤的分割和分类。
目前,脑肿瘤疾病的流行是一个全球性问题。一般来说,包含大量图像的放射摄影是诊断这些危及生命的疾病的有效方法。这方面最大的问题是,放射科医生需要花费很长的时间和体力来查看所有图像。因此,开发基于机器学习的系统以协助放射科医生进行诊断的研究与日俱增。卷积神经网络(CNN)是深度学习方法的一种,在包括脑肿瘤识别在内的多项医学成像应用中取得了最先进的成果。CNN 的超参数通常由人工设置,用于分割和分类,这可能需要一段时间,并增加了在这两项任务中使用次优超参数的几率。贝叶斯优化是更新深度 CNN 最佳超参数的有效方法。然而,CNN 网络可被视为一个 "黑盒 "模型,因为它的复杂性导致很难理解其存储的信息。因此,这个问题可以通过使用可解释人工智能(XAI)工具来解决,这些工具为医生提供了对 CNN 评估的现实解释。基于深度学习的系统在实时诊断中的应用仍然很少。原因之一可能是这些方法没有量化预测中的不确定性,这可能会削弱人们对基于人工智能的疾病诊断的信任。要想用于实时医疗诊断,基于 CNN 的模型必须逼真、吸引人,而且需要对不确定性进行评估。因此,我们提出了一种新颖的三阶段策略,用于对脑肿瘤进行分割和分类。首先使用 DeeplabV3+ 模型对脑肿瘤进行分割,并使用贝叶斯优化法调整超参数。在分类方面,从最先进的深度学习模型 Darknet53 和 mobilenetv2 中提取特征并输入 SVM 进行分类,同时使用贝叶斯方法优化 SVM 的超参数。第二步是了解 CNN 使用 XAI 算法提取图像中的哪一部分特征。利用混淆熵,最终量化贝叶斯优化分类器的不确定性。基于贝叶斯优化的深度学习框架,实验结果表明所提出的方法优于早期技术,分类准确率达到 97%,全局准确率达到 0.98。
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来源期刊
Journal of Neuroscience Methods
Journal of Neuroscience Methods 医学-神经科学
CiteScore
7.10
自引率
3.30%
发文量
226
审稿时长
52 days
期刊介绍: The Journal of Neuroscience Methods publishes papers that describe new methods that are specifically for neuroscience research conducted in invertebrates, vertebrates or in man. Major methodological improvements or important refinements of established neuroscience methods are also considered for publication. The Journal''s Scope includes all aspects of contemporary neuroscience research, including anatomical, behavioural, biochemical, cellular, computational, molecular, invasive and non-invasive imaging, optogenetic, and physiological research investigations.
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