Integrated clinical and metabolomic analysis identifies molecular signatures, biomarkers, and therapeutic targets in primary angle closure glaucoma

IF 3.9 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Frontiers in Molecular Biosciences Pub Date : 2024-08-09 DOI:10.3389/fmolb.2024.1421030
Vishnu Kannan, Sai Krishna Srimadh Bhagavatham, R. Dandamudi, Haripriya Kunchala, Sivateja Challa, A. Almansour, Ashish Pargaonkar, S. Pulukool, Anuj Sharma, Venketesh Sivaramakrishnan
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Abstract

Glaucoma is the leading cause of permanent blindness. Primary angle closure glaucoma (PACG) is diagnosed only after the onset of symptoms and can result in irreversible blindness despite the standard intraocular pressure (IOP) reduction therapy. The identification of potential biomarkers associated with prognosis will help improve disease management. This study aimed to identify mechanisms associated with disease progression, potential biomarkers, and therapeutic targets of PACG.The clinical data assessment of IOP, cup/disc ratio (CDR), Retinal Nerve Fiber Layer (RNFL) thickness of control, and PACG group were collected and analyzed for significant differences. The ATP levels were estimated, and targeted metabolomic analysis was performed on aqueous humor and cytokines in plasma. The pathways obtained from the metabolomics data set were compared with those obtained for data sets from the literature. Clinical parameters were correlated with cytokine levels. Targeted metabolomic analysis of cell culture supernatant from TNFα-treated N9 microglia was carried out, and overlap analysis was performed with data obtained from PACG patients.Elevated IOP, CDR, ATP, cytokines, and reduced RNFL thickness were found in PACG compared to controls. Analysis of PACG and TNFα-treated N9 microglial cell culture supernatant shows activation of immuno-metabolites. The metabolic pathways of PACG, TNFα, and ATP-treated microglia from the literature show considerable overlap. Biomarker analysis identified clinical parameters, ATP, cytokines, and immuno-metabolites.This study shows an association between elevated levels of ATP, cytokines, immuno-metabolism, and potential microglial inflammation with disease progression, rendering these levels potential biomarkers. P2 receptors, cytokines, and IDO1/2 could be potential therapeutic targets.
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综合临床和代谢组学分析确定原发性闭角型青光眼的分子特征、生物标志物和治疗靶点
青光眼是导致永久性失明的主要原因。原发性闭角型青光眼(PACG)在出现症状后才被诊断出来,尽管采用了标准的降低眼压(IOP)疗法,但仍可能导致不可逆的失明。确定与预后相关的潜在生物标志物将有助于改善疾病管理。本研究旨在确定与 PACG 疾病进展相关的机制、潜在生物标志物和治疗靶点。研究人员收集了对照组和 PACG 组的眼压、杯盘比(CDR)、视网膜神经纤维层(RNFL)厚度等临床数据,并分析了这些数据的显著差异。对 ATP 水平进行了估计,并对房水和血浆中的细胞因子进行了有针对性的代谢组学分析。将代谢组学数据集获得的通路与文献数据集获得的通路进行了比较。临床参数与细胞因子水平相关。与对照组相比,PACG 患者的眼压、CDR、ATP、细胞因子升高,RNFL 厚度降低。对 PACG 和 TNFα 处理的 N9 小胶质细胞培养上清的分析表明,免疫代谢产物被激活。文献显示,PACG、TNFα 和 ATP 处理的小胶质细胞的代谢途径有很大的重叠。生物标记物分析确定了临床参数、ATP、细胞因子和免疫代谢物。这项研究表明,ATP、细胞因子、免疫代谢物水平的升高和潜在的小胶质细胞炎症与疾病进展之间存在关联,从而使这些水平成为潜在的生物标记物。P2受体、细胞因子和IDO1/2可能成为潜在的治疗目标。
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来源期刊
Frontiers in Molecular Biosciences
Frontiers in Molecular Biosciences Biochemistry, Genetics and Molecular Biology-Biochemistry
CiteScore
7.20
自引率
4.00%
发文量
1361
审稿时长
14 weeks
期刊介绍: Much of contemporary investigation in the life sciences is devoted to the molecular-scale understanding of the relationships between genes and the environment — in particular, dynamic alterations in the levels, modifications, and interactions of cellular effectors, including proteins. Frontiers in Molecular Biosciences offers an international publication platform for basic as well as applied research; we encourage contributions spanning both established and emerging areas of biology. To this end, the journal draws from empirical disciplines such as structural biology, enzymology, biochemistry, and biophysics, capitalizing as well on the technological advancements that have enabled metabolomics and proteomics measurements in massively parallel throughput, and the development of robust and innovative computational biology strategies. We also recognize influences from medicine and technology, welcoming studies in molecular genetics, molecular diagnostics and therapeutics, and nanotechnology. Our ultimate objective is the comprehensive illustration of the molecular mechanisms regulating proteins, nucleic acids, carbohydrates, lipids, and small metabolites in organisms across all branches of life. In addition to interesting new findings, techniques, and applications, Frontiers in Molecular Biosciences will consider new testable hypotheses to inspire different perspectives and stimulate scientific dialogue. The integration of in silico, in vitro, and in vivo approaches will benefit endeavors across all domains of the life sciences.
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