Deep learning–based automated prediction of mouse seminiferous tubule stage by using bright-field microscopy

bioRxiv Pub Date : 2024-08-09 DOI:10.1101/2024.08.07.606973
Y. Tokuoka, Tsutomu Endo, Takashi Morikura, Yuki Hiradate, Masahito Ikawa, Akira Funahashi
{"title":"Deep learning–based automated prediction of mouse seminiferous tubule stage by using bright-field microscopy","authors":"Y. Tokuoka, Tsutomu Endo, Takashi Morikura, Yuki Hiradate, Masahito Ikawa, Akira Funahashi","doi":"10.1101/2024.08.07.606973","DOIUrl":null,"url":null,"abstract":"Infertility is a global issue, with approximately 50% of cases attributed to defective spermatogenesis. For studies into spermatogenesis and spermatogenic dysfunction, evaluating the seminiferous tubule stage is essential. However, the current method of evaluation involves labor-intensive and time-consuming manual tasks such as staining, observation, and image analysis. Lack of reproducibility is also a problem owing to the subjective nature of visual evaluation by experts. In this study, we propose a deep learning–based method for automatically and objectively evaluating the seminiferous tubule stage. Our approach automatically predicts which of 12 seminiferous tubule stages is represented in bright-field microscopic images of mouse seminiferous tubules stained by hematoxylin-PAS. For training and validation of our model, we created a dataset of 1229 tissue images, each labeled with one of 12 distinct seminiferous tubule stages. The maximum prediction accuracy was 79.58% which rose to 98.33% with allowance for a prediction error of ±1 stage. Remarkably, although the model was not explicitly trained on the patterns of transition between stages, it inferred characteristic structural patterns involved in the process of spermatogenesis. This method not only advances our understanding of spermatogenesis but also holds promise for improving the automated diagnosis of infertility.","PeriodicalId":505198,"journal":{"name":"bioRxiv","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2024-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"bioRxiv","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1101/2024.08.07.606973","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

Infertility is a global issue, with approximately 50% of cases attributed to defective spermatogenesis. For studies into spermatogenesis and spermatogenic dysfunction, evaluating the seminiferous tubule stage is essential. However, the current method of evaluation involves labor-intensive and time-consuming manual tasks such as staining, observation, and image analysis. Lack of reproducibility is also a problem owing to the subjective nature of visual evaluation by experts. In this study, we propose a deep learning–based method for automatically and objectively evaluating the seminiferous tubule stage. Our approach automatically predicts which of 12 seminiferous tubule stages is represented in bright-field microscopic images of mouse seminiferous tubules stained by hematoxylin-PAS. For training and validation of our model, we created a dataset of 1229 tissue images, each labeled with one of 12 distinct seminiferous tubule stages. The maximum prediction accuracy was 79.58% which rose to 98.33% with allowance for a prediction error of ±1 stage. Remarkably, although the model was not explicitly trained on the patterns of transition between stages, it inferred characteristic structural patterns involved in the process of spermatogenesis. This method not only advances our understanding of spermatogenesis but also holds promise for improving the automated diagnosis of infertility.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
利用明视野显微镜,基于深度学习自动预测小鼠曲细精管阶段
不育症是一个全球性问题,其中约50%的病例归因于精子发生缺陷。对于精子发生和生精功能障碍的研究,评估曲细精管阶段至关重要。然而,目前的评估方法涉及染色、观察和图像分析等耗费大量人力和时间的手工操作。此外,由于专家视觉评估的主观性,缺乏可重复性也是一个问题。在本研究中,我们提出了一种基于深度学习的方法,用于自动客观地评估曲细精管阶段。我们的方法能自动预测经苏木精-PAS染色的小鼠曲细精管明视野显微图像中的12个曲细精管阶段。为了训练和验证我们的模型,我们创建了一个包含 1229 张组织图像的数据集,每张图像都标注了 12 个不同的曲细精管阶段。最大预测准确率为 79.58%,在预测误差为 ±1 期的情况下,准确率上升到 98.33%。值得注意的是,虽然该模型没有根据阶段之间的过渡模式进行明确的训练,但它推断出了精子发生过程中的特征结构模式。这种方法不仅增进了我们对精子发生的了解,而且有望改善不育症的自动诊断。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Stability of cross-sensory input to primary somatosensory cortex across experience Genomic re-sequencing reveals mutational divergence across genetically engineered strains of model archaea A principled approach to community detection in interareal cortical networks A minimal mathematical model for polarity establishment and centralsplindlin-independent cytokinesis PTEN neddylation aggravates CDK4/6 inhibitor resistance in breast cancer
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1