Early detection of abiotic stress in plants through SNARE proteins using hybrid feature fusion model

IF 3.5 4区 计算机科学 Q2 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE PeerJ Computer Science Pub Date : 2024-08-05 DOI:10.7717/peerj-cs.2149
Bhargavi T., Sumathi D.
{"title":"Early detection of abiotic stress in plants through SNARE proteins using hybrid feature fusion model","authors":"Bhargavi T., Sumathi D.","doi":"10.7717/peerj-cs.2149","DOIUrl":null,"url":null,"abstract":"Agriculture is the main source of livelihood for most of the population across the globe. Plants are often considered life savers for humanity, having evolved complex adaptations to cope with adverse environmental conditions. Protecting agricultural produce from devastating conditions such as stress is essential for the sustainable development of the nation. Plants respond to various environmental stressors such as drought, salinity, heat, cold, etc. Abiotic stress can significantly impact crop yield and development posing a major threat to agriculture. SNARE proteins play a major role in pathological processes as they are vital proteins in the life sciences. These proteins act as key players in stress responses. Feature extraction is essential for visualizing the underlying structure of the SNARE proteins in analyzing the root cause of abiotic stress in plants. To address this issue, we developed a hybrid model to capture the hidden structures of the SNAREs. A feature fusion technique has been devised by combining the potential strengths of convolutional neural networks (CNN) with a high dimensional radial basis function (RBF) network. Additionally, we employ a bi-directional long short-term memory (Bi-LSTM) network to classify the presence of SNARE proteins. Our feature fusion model successfully identified abiotic stress in plants with an accuracy of 74.6%. When compared with various existing frameworks, our model demonstrates superior classification results.","PeriodicalId":54224,"journal":{"name":"PeerJ Computer Science","volume":null,"pages":null},"PeriodicalIF":3.5000,"publicationDate":"2024-08-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"PeerJ Computer Science","FirstCategoryId":"94","ListUrlMain":"https://doi.org/10.7717/peerj-cs.2149","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE","Score":null,"Total":0}
引用次数: 0

Abstract

Agriculture is the main source of livelihood for most of the population across the globe. Plants are often considered life savers for humanity, having evolved complex adaptations to cope with adverse environmental conditions. Protecting agricultural produce from devastating conditions such as stress is essential for the sustainable development of the nation. Plants respond to various environmental stressors such as drought, salinity, heat, cold, etc. Abiotic stress can significantly impact crop yield and development posing a major threat to agriculture. SNARE proteins play a major role in pathological processes as they are vital proteins in the life sciences. These proteins act as key players in stress responses. Feature extraction is essential for visualizing the underlying structure of the SNARE proteins in analyzing the root cause of abiotic stress in plants. To address this issue, we developed a hybrid model to capture the hidden structures of the SNAREs. A feature fusion technique has been devised by combining the potential strengths of convolutional neural networks (CNN) with a high dimensional radial basis function (RBF) network. Additionally, we employ a bi-directional long short-term memory (Bi-LSTM) network to classify the presence of SNARE proteins. Our feature fusion model successfully identified abiotic stress in plants with an accuracy of 74.6%. When compared with various existing frameworks, our model demonstrates superior classification results.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
利用混合特征融合模型通过 SNARE 蛋白早期检测植物的非生物胁迫
农业是全球大多数人口的主要生计来源。植物通常被认为是人类的救星,它们进化出复杂的适应能力来应对不利的环境条件。保护农产品免受压力等破坏性条件的影响对国家的可持续发展至关重要。植物会对干旱、盐碱、高温、严寒等各种环境胁迫做出反应。非生物胁迫会严重影响作物的产量和生长发育,对农业构成重大威胁。SNARE 蛋白在病理过程中发挥着重要作用,因为它们是生命科学中的重要蛋白质。这些蛋白质在应激反应中扮演着关键角色。在分析植物非生物胁迫的根本原因时,特征提取对于可视化 SNARE 蛋白的底层结构至关重要。为了解决这个问题,我们开发了一种混合模型来捕捉 SNARE 的隐藏结构。通过结合卷积神经网络(CNN)和高维径向基函数(RBF)网络的潜在优势,我们设计了一种特征融合技术。此外,我们还采用了双向长短期记忆(Bi-LSTM)网络来对 SNARE 蛋白质的存在进行分类。我们的特征融合模型成功识别了植物的非生物胁迫,准确率高达 74.6%。与现有的各种框架相比,我们的模型显示出更优越的分类结果。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
PeerJ Computer Science
PeerJ Computer Science Computer Science-General Computer Science
CiteScore
6.10
自引率
5.30%
发文量
332
审稿时长
10 weeks
期刊介绍: PeerJ Computer Science is the new open access journal covering all subject areas in computer science, with the backing of a prestigious advisory board and more than 300 academic editors.
期刊最新文献
A model integrating attention mechanism and generative adversarial network for image style transfer. Detecting rumors in social media using emotion based deep learning approach. Harnessing AI and analytics to enhance cybersecurity and privacy for collective intelligence systems. Improving synthetic media generation and detection using generative adversarial networks. Intelligent accounting optimization method based on meta-heuristic algorithm and CNN.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1