Remote sensing for estimating genetic parameters of biomass accumulation and modeling stability of growth curves in alfalfa.

IF 2.1 3区 生物学 Q3 GENETICS & HEREDITY G3: Genes|Genomes|Genetics Pub Date : 2024-11-06 DOI:10.1093/g3journal/jkae200
Ranjita Thapa, Karl H Kunze, Julie Hansen, Christopher Pierce, Virginia Moore, Ian Ray, Liam Wickes-Do, Nicolas Morales, Felipe Sabadin, Nicholas Santantonio, Michael A Gore, Kelly Robbins
{"title":"Remote sensing for estimating genetic parameters of biomass accumulation and modeling stability of growth curves in alfalfa.","authors":"Ranjita Thapa, Karl H Kunze, Julie Hansen, Christopher Pierce, Virginia Moore, Ian Ray, Liam Wickes-Do, Nicolas Morales, Felipe Sabadin, Nicholas Santantonio, Michael A Gore, Kelly Robbins","doi":"10.1093/g3journal/jkae200","DOIUrl":null,"url":null,"abstract":"<p><p>Multispectral imaging by unoccupied aerial vehicles provides a nondestructive, high-throughput approach to measure biomass accumulation over successive alfalfa (Medicago sativa L. subsp. sativa) harvests. Information from estimated growth curves can be used to infer harvest biomass and to gain insights into the relationship between growth dynamics and forage biomass stability across cuttings and years. In this study, multispectral imaging and several common vegetation indices were used to estimate genetic parameters and model growth of alfalfa cultivars to determine the longitudinal relationship between vegetation indices and forage biomass. Results showed moderate heritability for vegetation indices, with median plot level heritability ranging from 0.11 to 0.64, across multiple cuttings in three trials planted in Ithaca, NY, and Las Cruces, NM. Genetic correlations between the normalized difference vegetation index and forage biomass were moderate to high across trials, cuttings, and the timing of multispectral image capture. To evaluate the relationship between growth parameters and forage biomass stability across cuttings and environmental conditions, random regression modeling approaches were used to estimate the growth parameters of cultivars for each cutting and the variance in growth was compared to the variance in genetic estimates of forage biomass yield across cuttings. These analyses revealed high correspondence between stability in growth parameters and stability of forage yield. The results of this study indicate that vegetation indices are effective at modeling genetic components of biomass accumulation, presenting opportunities for more efficient screening of cultivars and new longitudinal modeling approaches that can provide insights into temporal factors influencing cultivar stability.</p>","PeriodicalId":12468,"journal":{"name":"G3: Genes|Genomes|Genetics","volume":" ","pages":""},"PeriodicalIF":2.1000,"publicationDate":"2024-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11540325/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"G3: Genes|Genomes|Genetics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1093/g3journal/jkae200","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0

Abstract

Multispectral imaging by unoccupied aerial vehicles provides a nondestructive, high-throughput approach to measure biomass accumulation over successive alfalfa (Medicago sativa L. subsp. sativa) harvests. Information from estimated growth curves can be used to infer harvest biomass and to gain insights into the relationship between growth dynamics and forage biomass stability across cuttings and years. In this study, multispectral imaging and several common vegetation indices were used to estimate genetic parameters and model growth of alfalfa cultivars to determine the longitudinal relationship between vegetation indices and forage biomass. Results showed moderate heritability for vegetation indices, with median plot level heritability ranging from 0.11 to 0.64, across multiple cuttings in three trials planted in Ithaca, NY, and Las Cruces, NM. Genetic correlations between the normalized difference vegetation index and forage biomass were moderate to high across trials, cuttings, and the timing of multispectral image capture. To evaluate the relationship between growth parameters and forage biomass stability across cuttings and environmental conditions, random regression modeling approaches were used to estimate the growth parameters of cultivars for each cutting and the variance in growth was compared to the variance in genetic estimates of forage biomass yield across cuttings. These analyses revealed high correspondence between stability in growth parameters and stability of forage yield. The results of this study indicate that vegetation indices are effective at modeling genetic components of biomass accumulation, presenting opportunities for more efficient screening of cultivars and new longitudinal modeling approaches that can provide insights into temporal factors influencing cultivar stability.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
利用遥感技术估算紫花苜蓿生物量积累的遗传参数并模拟生长曲线的稳定性。
无人飞行器的多光谱成像技术为测量紫花苜蓿(Medicago sativa L. subsp.从估计的生长曲线中获得的信息可用于推断收获生物量,并深入了解不同扦插期和年份的生长动态与牧草生物量稳定性之间的关系。在这项研究中,多光谱成像和几种常见的植被指数被用来估算遗传参数和建立紫花苜蓿栽培品种的生长模型,以确定植被指数和牧草生物量之间的纵向关系。结果表明,在纽约州伊萨卡市和新墨西哥州拉斯克鲁塞斯市种植的三个试验中,植被指数的遗传率中等,地块水平遗传率中位数为 0.11-0.64。归一化差异植被指数与牧草生物量之间的遗传相关性在不同试验、扦插点和多光谱图像捕获时间之间呈中度到高度相关。为了评估不同插条和环境条件下生长参数与牧草生物量稳定性之间的关系,采用随机回归建模方法估算了每个插条的栽培品种生长参数,并将生长方差与不同插条牧草生物量产量遗传估计方差进行了比较。这些分析表明,生长参数的稳定性与牧草产量的稳定性高度一致。这项研究的结果表明,植被指数能有效地模拟生物量积累的遗传成分,为更有效地筛选栽培品种和采用新的纵向建模方法提供了机会,从而能深入了解影响栽培品种稳定性的时间因素。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
G3: Genes|Genomes|Genetics
G3: Genes|Genomes|Genetics GENETICS & HEREDITY-
CiteScore
5.10
自引率
3.80%
发文量
305
审稿时长
3-8 weeks
期刊介绍: G3: Genes, Genomes, Genetics provides a forum for the publication of high‐quality foundational research, particularly research that generates useful genetic and genomic information such as genome maps, single gene studies, genome‐wide association and QTL studies, as well as genome reports, mutant screens, and advances in methods and technology. The Editorial Board of G3 believes that rapid dissemination of these data is the necessary foundation for analysis that leads to mechanistic insights. G3, published by the Genetics Society of America, meets the critical and growing need of the genetics community for rapid review and publication of important results in all areas of genetics. G3 offers the opportunity to publish the puzzling finding or to present unpublished results that may not have been submitted for review and publication due to a perceived lack of a potential high-impact finding. G3 has earned the DOAJ Seal, which is a mark of certification for open access journals, awarded by DOAJ to journals that achieve a high level of openness, adhere to Best Practice and high publishing standards.
期刊最新文献
A collection of split-Gal4 drivers targeting conserved signaling ligands in Drosophila. GenoTools: An Open-Source Python Package for Efficient Genotype Data Quality Control and Analysis. Testis- and ovary-expressed polo-like kinase transcripts and gene duplications affect male fertility when expressed in the Drosophila melanogaster germline. Transcriptome profiling of maize transcription factor mutants to probe gene regulatory network predictions. Comparative genomics reveals putative copper tolerance genes in a Fusarium oxysporum strain.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1