The impact of the carbohydrate-binding module on how a lytic polysaccharide monooxygenase modifies cellulose fibers

IF 6.1 1区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Biotechnology for Biofuels Pub Date : 2024-08-24 DOI:10.1186/s13068-024-02564-8
Fredrik G. Støpamo, Irina Sulaeva, David Budischowsky, Jenni Rahikainen, Kaisa Marjamaa, Kristiina Kruus, Antje Potthast, Vincent G. H. Eijsink, Anikó Várnai
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引用次数: 0

Abstract

Background

In recent years, lytic polysaccharide monooxygenases (LPMOs) that oxidatively cleave cellulose have gained increasing attention in cellulose fiber modification. LPMOs are relatively small copper-dependent redox enzymes that occur as single domain proteins but may also contain an appended carbohydrate-binding module (CBM). Previous studies have indicated that the CBM “immobilizes” the LPMO on the substrate and thus leads to more localized oxidation of the fiber surface. Still, our understanding of how LPMOs and their CBMs modify cellulose fibers remains limited.

Results

Here, we studied the impact of the CBM on the fiber-modifying properties of NcAA9C, a two-domain family AA9 LPMO from Neurospora crassa, using both biochemical methods as well as newly developed multistep fiber dissolution methods that allow mapping LPMO action across the fiber, from the fiber surface to the fiber core. The presence of the CBM in NcAA9C improved binding towards amorphous (PASC), natural (Cell I), and alkali-treated (Cell II) cellulose, and the CBM was essential for significant binding of the non-reduced LPMO to Cell I and Cell II. Substrate binding of the catalytic domain was promoted by reduction, allowing the truncated CBM-free NcAA9C to degrade Cell I and Cell II, albeit less efficiently and with more autocatalytic enzyme degradation compared to the full-length enzyme. The sequential dissolution analyses showed that cuts by the CBM-free enzyme are more evenly spread through the fiber compared to the CBM-containing full-length enzyme and showed that the truncated enzyme can penetrate deeper into the fiber, thus giving relatively more oxidation and cleavage in the fiber core.

Conclusions

These results demonstrate the capability of LPMOs to modify cellulose fibers from surface to core and reveal how variation in enzyme modularity can be used to generate varying cellulose-based materials. While the implications of these findings for LPMO-based cellulose fiber engineering remain to be explored, it is clear that the presence of a CBM is an important determinant of the three-dimensional distribution of oxidation sites in the fiber.

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碳水化合物结合模块对溶解多糖单氧化酶如何改变纤维素纤维的影响
背景近年来,氧化裂解纤维素的溶解性多糖单氧化酶(LPMOs)在纤维素纤维改性领域越来越受到关注。LPMOs 是一种相对较小的依赖铜的氧化还原酶,以单域蛋白形式存在,但也可能包含一个附加的碳水化合物结合模块(CBM)。以前的研究表明,CBM 可将 LPMO "固定 "在基质上,从而导致纤维表面更局部的氧化。结果在这里,我们使用生化方法和新开发的多步纤维溶解方法研究了 CBM 对 NcAA9C(一种来自 Neurospora crassa 的双域 AA9 LPMO)的纤维修饰特性的影响,这种方法允许绘制从纤维表面到纤维核心的整个纤维的 LPMO 作用图。NcAA9C 中 CBM 的存在改善了与无定形纤维素(PASC)、天然纤维素(细胞 I)和碱处理纤维素(细胞 II)的结合。还原作用促进了催化结构域的底物结合,使不含 CBM 的截短 NcAA9C 能够降解细胞 I 和细胞 II,尽管与全长酶相比,其降解效率较低,自催化酶降解作用较强。顺序溶解分析表明,与含有 CBM 的全长酶相比,不含 CBM 的酶的切割在纤维中分布得更均匀,并表明截短酶可以更深入地渗透到纤维中,从而在纤维核心中产生相对更多的氧化和裂解。虽然这些发现对基于 LPMO 的纤维素纤维工程学的影响仍有待探索,但很明显,CBM 的存在是纤维中氧化位点三维分布的重要决定因素。
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来源期刊
Biotechnology for Biofuels
Biotechnology for Biofuels 工程技术-生物工程与应用微生物
自引率
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审稿时长
2.7 months
期刊介绍: Biotechnology for Biofuels is an open access peer-reviewed journal featuring high-quality studies describing technological and operational advances in the production of biofuels, chemicals and other bioproducts. The journal emphasizes understanding and advancing the application of biotechnology and synergistic operations to improve plants and biological conversion systems for the biological production of these products from biomass, intermediates derived from biomass, or CO2, as well as upstream or downstream operations that are integral to biological conversion of biomass. Biotechnology for Biofuels focuses on the following areas: • Development of terrestrial plant feedstocks • Development of algal feedstocks • Biomass pretreatment, fractionation and extraction for biological conversion • Enzyme engineering, production and analysis • Bacterial genetics, physiology and metabolic engineering • Fungal/yeast genetics, physiology and metabolic engineering • Fermentation, biocatalytic conversion and reaction dynamics • Biological production of chemicals and bioproducts from biomass • Anaerobic digestion, biohydrogen and bioelectricity • Bioprocess integration, techno-economic analysis, modelling and policy • Life cycle assessment and environmental impact analysis
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