Unveiling the crystal structure of thermostable dienelactone hydrolase exhibiting activity on terephthalate esters

IF 3.4 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Enzyme and Microbial Technology Pub Date : 2024-08-21 DOI:10.1016/j.enzmictec.2024.110498
Dnane Vieira Almeida , Iara Ciancaglini , Ana Luiza Hernandes Sandano , Ellen K.B. Roman , Viviane Brito Andrade , Ana Bárbara Nunes , Robson Tramontina , Viviam Moura da Silva , Frank Gabel , Thamy L.R. Corrêa , André Damasio , João Renato Carvalho Muniz , Fabio Marcio Squina , Wanius Garcia
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Abstract

Dienelactone hydrolase (DLH) is one of numerous hydrolytic enzymes with an α/β-hydrolase fold, which catalyze the hydrolysis of dienelactone to maleylacetate. The DLHs share remarkably similar tertiary structures and a conserved arrangement of catalytic residues. This study presents the crystal structure and comprehensive functional characterization of a novel thermostable DLH from the bacterium Hydrogenobacter thermophilus (HtDLH). The crystal structure of the HtDLH, solved at a resolution of about 1.67 Å, exhibits a canonical α/β-hydrolase fold formed by eight β-sheet strands in the core, with one buried α-helix and six others exposed to the solvent. The structure also confirmed the conserved catalytic triad of DHLs formed by Cys121, Asp170, and His202 residues. The HtDLH forms stable homodimers in solution. Functional studies showed that HtDLH has the expected esterase activity over esters with short carbon chains, such as p-nitrophenyl acetate, reaching optimal activity at pH 7.5 and 70 °C. Furthermore, HtDLH maintains more than 50 % of its activity even after incubation at 90 °C for 16 h. Interestingly, HtDLH exhibits catalytic activity towards polyethylene terephthalate (PET) monomers, including bis-1,2-hydroxyethyl terephthalate (BHET) and 1-(2-hydroxyethyl) 4-methyl terephthalate, as well as other aliphatic and aromatic esters. These findings associated with the lack of activity on amorphous PET indicate that HtDLH has characteristic of a BHET-degrading enzyme. This work expands our understanding of enzyme families involved in PET degradation, providing novel insights for plastic biorecycling through protein engineering, which could lead to eco-friendly solutions to reduce the accumulation of plastic in landfills and natural environments.

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揭示对苯二酸酯具有活性的恒温二烯丙基内酯水解酶的晶体结构
二烯丙基内酯水解酶(DLH)是众多具有α/β-水解酶结构的水解酶之一,可催化二烯丙基内酯水解为马来乙酸酯。DLHs 具有非常相似的三级结构和保守的催化残基排列。本研究展示了嗜热氢杆菌(Hydrogenobacter thermophilus,HtDLH)中一种新型恒温 DLH 的晶体结构和全面的功能表征。HtDLH 的晶体结构分辨率约为 1.67 Å,呈现出典型的 α/β-hydrolase 折叠结构,其核心由八条 β-片层链组成,其中一条α-螺旋被埋藏,另外六条暴露于溶剂中。该结构还证实了由 Cys121、Asp170 和 His202 残基组成的 DHL 的保守催化三元组。HtDLH 在溶液中形成稳定的同源二聚体。功能研究表明,HtDLH 对对硝基苯乙酸酯等碳链较短的酯类具有预期的酯酶活性,在 pH 值为 7.5 和 70 °C 时达到最佳活性。此外,即使在 90 °C 下培养 16 小时,HtDLH 仍能保持 50% 以上的活性。有趣的是,HtDLH 对聚对苯二甲酸乙二醇酯(PET)单体(包括对苯二甲酸双-1,2-羟乙基酯(BHET)和对苯二甲酸 1-(2-羟乙基)-4-甲基酯)以及其他脂肪族和芳香族酯具有催化活性。这些发现与对无定形 PET 缺乏活性有关,表明 HtDLH 具有 BHET 降解酶的特征。这项工作拓展了我们对参与 PET 降解的酶家族的了解,为通过蛋白质工程进行塑料生物循环提供了新的见解,从而为减少塑料在垃圾填埋场和自然环境中的积累提供了生态友好型解决方案。
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来源期刊
Enzyme and Microbial Technology
Enzyme and Microbial Technology 生物-生物工程与应用微生物
CiteScore
7.60
自引率
5.90%
发文量
142
审稿时长
38 days
期刊介绍: Enzyme and Microbial Technology is an international, peer-reviewed journal publishing original research and reviews, of biotechnological significance and novelty, on basic and applied aspects of the science and technology of processes involving the use of enzymes, micro-organisms, animal cells and plant cells. We especially encourage submissions on: Biocatalysis and the use of Directed Evolution in Synthetic Biology and Biotechnology Biotechnological Production of New Bioactive Molecules, Biomaterials, Biopharmaceuticals, and Biofuels New Imaging Techniques and Biosensors, especially as applicable to Healthcare and Systems Biology New Biotechnological Approaches in Genomics, Proteomics and Metabolomics Metabolic Engineering, Biomolecular Engineering and Nanobiotechnology Manuscripts which report isolation, purification, immobilization or utilization of organisms or enzymes which are already well-described in the literature are not suitable for publication in EMT, unless their primary purpose is to report significant new findings or approaches which are of broad biotechnological importance. Similarly, manuscripts which report optimization studies on well-established processes are inappropriate. EMT does not accept papers dealing with mathematical modeling unless they report significant, new experimental data.
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