A comprehensive pan-cancer analysis revealing the role of ITPRIPL1 as a prognostic and immunological biomarker.

IF 3.9 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Frontiers in Molecular Biosciences Pub Date : 2024-08-15 eCollection Date: 2024-01-01 DOI:10.3389/fmolb.2024.1452290
Wenyuan Duan, Wen Tian, Zhongyi Li, Yunsong Liu, Linping Xu
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Abstract

Inositol 1,4,5-Trisphosphate Receptor-Interacting Protein-Like 1 (ITPRIPL1), a single-pass type I membrane protein located in the membrane, functions as an inhibitory ligand of CD3ε. Recent studies have shown that its expression suppresses T cells activation and promote tumor immune evasion. Despite increasing evidence suggesting that ITPRIPL1 plays a significant role in tumor growth, no systematic pan-cancer analysis of ITPRIPL1 has been conducted to date. This study utilized datasets curated from The Cancer Genome Atlas, Genotype Tissue-Expression, and Human Protein Atlas to investigate the relationship between ITPRIPL1 expression and clinical outcomes, immune infiltration, and drug sensitivity across 33 cancer types. We employed multiple methods to assess its prognostic value in pan-cancer, such as univariate Cox regression, survival analysis, and ROC curve analysis and explored the relationship between ITPRIPL1 and tumor mutation burden (TMB), tumor microsatellite instability (MSI), CNV, DNA methylation, immune-related genes, immune cell infiltration, and drug sensitivity to reveal its immunological role. The mRNA expression levels of the ITPRIPL1 gene vary significantly across multiple types of cancer and significantly reduced in breast cancer. Conversely, high ITPRIPL1 expression was associated with a better prognosis in BRCA. Furthermore, the expression of ITPRIPL1 highly correlates with the presence of tumor-infiltrating immune cells and immune checkpoint genes across various types of cancers. Additionally, ITPRIPL1 expression was associated with TMB in 6 cancer types and with MSI in 13 cancer types. High expression of ITPRIPL1 serves as a protective factor in certain cancer types, correlating with longer overall survival in BRCA. Our study further confirms that ITPRIPL1 participates in regulating immune infiltration and affecting the prognosis of patients in pan-cancer. These findings underscore the promising potential of ITPRIPL1 as a therapeutic target for human cancer.

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一项全面的泛癌症分析揭示了 ITPRIPL1 作为预后和免疫生物标志物的作用。
1,4,5- 三磷酸肌醇受体相互作用蛋白 1(Inositol 1,4,5-Trisphosphate Receptor-Interacting Protein-Like 1,ITPRIPL1)是一种位于膜上的单通道 I 型膜蛋白,具有 CD3ε 抑制配体的功能。最近的研究表明,它的表达能抑制 T 细胞的活化并促进肿瘤免疫逃避。尽管越来越多的证据表明 ITPRIPL1 在肿瘤生长中起着重要作用,但迄今为止还没有对 ITPRIPL1 进行过系统的泛癌症分析。本研究利用癌症基因组图谱、基因型组织表达和人类蛋白质图谱中的数据集,研究了33种癌症类型中ITPRIPL1的表达与临床结果、免疫浸润和药物敏感性之间的关系。我们采用单变量考克斯回归、生存分析和ROC曲线分析等多种方法评估了ITPRIPL1在泛癌症中的预后价值,并探讨了ITPRIPL1与肿瘤突变负荷(TMB)、肿瘤微卫星不稳定性(MSI)、CNV、DNA甲基化、免疫相关基因、免疫细胞浸润和药物敏感性之间的关系,以揭示其免疫学作用。ITPRIPL1 基因的 mRNA 表达水平在多种类型的癌症中差异显著,在乳腺癌中则明显降低。相反,ITPRIPL1 的高表达与 BRCA 的较好预后相关。此外,ITPRIPL1 的表达与各种类型癌症中肿瘤浸润免疫细胞和免疫检查点基因的存在高度相关。此外,在 6 种癌症类型中,ITPRIPL1 的表达与 TMB 相关,在 13 种癌症类型中,ITPRIPL1 的表达与 MSI 相关。ITPRIPL1 的高表达在某些癌症类型中是一种保护因素,与 BRCA 患者的总生存期延长相关。我们的研究进一步证实,ITPRIPL1 参与调节免疫浸润并影响泛癌症患者的预后。这些发现凸显了 ITPRIPL1 作为人类癌症治疗靶点的巨大潜力。
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来源期刊
Frontiers in Molecular Biosciences
Frontiers in Molecular Biosciences Biochemistry, Genetics and Molecular Biology-Biochemistry
CiteScore
7.20
自引率
4.00%
发文量
1361
审稿时长
14 weeks
期刊介绍: Much of contemporary investigation in the life sciences is devoted to the molecular-scale understanding of the relationships between genes and the environment — in particular, dynamic alterations in the levels, modifications, and interactions of cellular effectors, including proteins. Frontiers in Molecular Biosciences offers an international publication platform for basic as well as applied research; we encourage contributions spanning both established and emerging areas of biology. To this end, the journal draws from empirical disciplines such as structural biology, enzymology, biochemistry, and biophysics, capitalizing as well on the technological advancements that have enabled metabolomics and proteomics measurements in massively parallel throughput, and the development of robust and innovative computational biology strategies. We also recognize influences from medicine and technology, welcoming studies in molecular genetics, molecular diagnostics and therapeutics, and nanotechnology. Our ultimate objective is the comprehensive illustration of the molecular mechanisms regulating proteins, nucleic acids, carbohydrates, lipids, and small metabolites in organisms across all branches of life. In addition to interesting new findings, techniques, and applications, Frontiers in Molecular Biosciences will consider new testable hypotheses to inspire different perspectives and stimulate scientific dialogue. The integration of in silico, in vitro, and in vivo approaches will benefit endeavors across all domains of the life sciences.
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