Transcriptome analysis provides new insight into the mechanism of Bombyx mori under zinc exposure

IF 2.2 2区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Comparative Biochemistry and Physiology D-Genomics & Proteomics Pub Date : 2024-08-28 DOI:10.1016/j.cbd.2024.101320
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Abstract

Zinc is a significant source of heavy metal pollution that poses risks to both human health and biodiversity. Excessive concentrations of zinc can hinder the growth and development of insects and trigger cell death through oxidative damage. The midgut is the main organ affected by exposure to heavy metals. The silkworm, a prominent insect species belonging to the Lepidoptera class and widely used in China, serves as a model for studying the genetic response to heavy metal stress. In this study, high-throughput sequencing technology was employed to investigate detoxification-related genes in the midgut that are induced by zinc exposure. A total of 11,320 unigenes and 14,723 transcripts were identified, with 553 differentially expressed genes (DEGs) detected, among which 394 were up-regulated and 159 were down-regulated. The Gene Ontology (GO) analysis revealed that 452 DEGs were involved in 18 biological process subclasses, 14 cellular component subclasses and 8 molecular functional subclasses. Furthermore, the KEGG analysis demonstrated enrichment in pathways such as Protein digestion, absorption and Lysosome. Validation of the expression levels of 9 detoxification-related DEGs through qRT-PCR confirmed the accuracy of the RNA-seq results. This study not only contributes new insights into the detoxification mechanisms mechanism of silkworms against zinc contamination, but also serves as a foundation basis for understanding the molecular detoxification processes in lepidopteran insects.

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转录组分析为了解蚕在锌暴露下的机理提供了新的视角
锌是重金属污染的一个重要来源,对人类健康和生物多样性都构成风险。锌浓度过高会阻碍昆虫的生长和发育,并通过氧化损伤引发细胞死亡。中肠是受重金属影响的主要器官。家蚕是中国广泛使用的鳞翅目昆虫,是研究重金属胁迫遗传响应的模型。本研究采用高通量测序技术研究了锌暴露诱导的中肠解毒相关基因。研究共鉴定了11 320个单基因和14 723个转录本,发现了553个差异表达基因(DEGs),其中394个上调,159个下调。基因本体(GO)分析显示,452 个 DEGs 涉及 18 个生物过程亚类、14 个细胞组分亚类和 8 个分子功能亚类。此外,KEGG 分析还显示了蛋白质消化、吸收和溶酶体等通路的富集。通过 qRT-PCR 验证了 9 个与解毒相关的 DEGs 的表达水平,证实了 RNA-seq 结果的准确性。这项研究不仅对家蚕抗锌污染的解毒机制有了新的认识,也为了解鳞翅目昆虫的分子解毒过程奠定了基础。
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来源期刊
CiteScore
5.10
自引率
3.30%
发文量
69
审稿时长
33 days
期刊介绍: Comparative Biochemistry & Physiology (CBP) publishes papers in comparative, environmental and evolutionary physiology. Part D: Genomics and Proteomics (CBPD), focuses on “omics” approaches to physiology, including comparative and functional genomics, metagenomics, transcriptomics, proteomics, metabolomics, and lipidomics. Most studies employ “omics” and/or system biology to test specific hypotheses about molecular and biochemical mechanisms underlying physiological responses to the environment. We encourage papers that address fundamental questions in comparative physiology and biochemistry rather than studies with a focus that is purely technical, methodological or descriptive in nature.
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