A knowledge-transfer-based approach for combining ordinal regression and medical scoring system in the early prediction of sepsis with electronic health records

IF 2.6 4区 生物学 Q2 BIOLOGY Computational Biology and Chemistry Pub Date : 2024-09-02 DOI:10.1016/j.compbiolchem.2024.108203
Yu Ji , Kaipeng Wang , Yuan Yuan , Yueguo Wang , Qingyuan Liu , Yulan Wang , Jian Sun , Wenwen Wang , Huanli Wang , Shusheng Zhou , Kui Jin , Mengping Zhang , Yinglei Lai
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引用次数: 0

Abstract

Objective:

The prediction of sepsis, especially early diagnosis, has received a significant attention in biomedical research. In order to improve current medical scoring system and overcome the limitations of class imbalance and sample size of local EHR (electronic health records), we propose a novel knowledge-transfer-based approach, which combines a medical scoring system and an ordinal logistic regression model.

Materials and Methods:

Medical scoring systems (i.e. NEWS, SIRS and QSOFA) are generally robust and useful for sepsis diagnosis. With local EHR, machine-learning-based methods have been widely used for building prediction models/methods, but they are often impacted by class imbalance and sample size. Knowledge distillation and knowledge transfer have recently been proposed as a combination approach for improving the prediction performance and model generalization. In this study, we developed a novel knowledge-transfer-based method for combining a medical scoring system (after a proposed score transformation) and an ordinal logistic regression model. We mathematically confirmed that it was equivalent to a specific form of the weighted regression. Furthermore, we theoretically explored its effectiveness in the scenario of class imbalance.

Results:

For the local dataset and the MIMIC-IV dataset, the VUS (the volume under the multi-dimensional ROC surface, a generalization measure of AUC-ROC for ordinal categories) of the knowledge-transfer-based model (ORNEWS) based on the NEWS scoring system were 0.384 and 0.339, respectively, while the VUS of the traditional ordinal regression model (OR) were 0.352 and 0.322, respectively. Consistent analysis results were also observed for the knowledge-transfer-based models based on the SIRS/QSOFA scoring systems in the ordinal scenarios. Additionally, the predicted probabilities and the binary classification ROC curves of the knowledge-transfer-based models indicated that this approach enhanced the predicted probabilities for the minority classes while reducing the predicted probabilities for the majority classes, which improved AUCs/VUSs on imbalanced data.

Discussion:

Knowledge transfer, which combines a medical scoring system and a machine-learning-based model, improves the prediction performance for early diagnosis of sepsis, especially in the scenarios of class imbalance and limited sample size.

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基于知识转移的方法,结合序数回归和医疗评分系统,利用电子健康记录对败血症进行早期预测
目的:败血症的预测,尤其是早期诊断,在生物医学研究中受到了极大的关注。材料与方法:医学评分系统(即 NEWS、SIRS 和 QSOFA)一般都很稳健,对败血症诊断很有用。在本地电子病历中,基于机器学习的方法已被广泛用于建立预测模型/方法,但这些方法往往受到类别不平衡和样本大小的影响。最近有人提出了知识提炼和知识转移相结合的方法,以提高预测性能和模型泛化。在本研究中,我们开发了一种基于知识转移的新方法,用于将医学评分系统(经过提议的评分转换后)与序数逻辑回归模型相结合。我们从数学上证实,该方法等同于加权回归的一种特定形式。结果:对于本地数据集和 MIMIC-IV 数据集,基于 NEWS 评分系统的知识转移模型(ORNEWS)的 VUS(多维 ROC 面下的体积,是 AUC-ROC 对序数类别的概括度量)分别为 0.384 和 0.339,而传统序数回归模型(OR)的 VUS 分别为 0.352 和 0.322。基于 SIRS/QSOFA 评分系统的知识转移模型在序数情景中也观察到了一致的分析结果。此外,基于知识转移的模型的预测概率和二元分类 ROC 曲线表明,这种方法提高了少数类别的预测概率,同时降低了多数类别的预测概率,从而提高了不平衡数据的 AUCs/VUS。
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来源期刊
Computational Biology and Chemistry
Computational Biology and Chemistry 生物-计算机:跨学科应用
CiteScore
6.10
自引率
3.20%
发文量
142
审稿时长
24 days
期刊介绍: Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered. Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered. Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.
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