Rapid and visual detection of Mycoplasma genitalium using recombinase polymerase amplification combined with lateral flow strips

IF 1.7 4区 生物学 Q4 BIOCHEMICAL RESEARCH METHODS Journal of microbiological methods Pub Date : 2024-09-06 DOI:10.1016/j.mimet.2024.107030
Pufang Ren , Yingmin Zeng , Yao Feng , Honghai Hong, Yong Xia
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Abstract

Mycoplasma genitalium (MG) is an important sexually transmitted pathogen that can cause urethritis in males and pelvic inflammatory disease in females. Due to its complex growth requirements and lengthy incubation times, culturing MG in clinical laboratories is impractical. Here we describe a rapid and visual assay combining recombinase polymerase amplification (RPA) with lateral flow (LF) strips to detect MG (MG-RPA-LF). The limit of detection (LoD) of this method was 33.6 genome equivalents (GE) per reaction, using a dilution series of purified genomic DNA. Clinical performance was evaluated by testing 100 urogenital swabs. Compared to the Simultaneous Amplification and Testing assay, our MG-RPA-LF assay showed a sensitivity of 94 % (95 % CI, 82 %–98 %) and a specificity of 100 % (95 % CI, 91 %–100 %). The overall concordance between the two methods was 97 % (95 % CI, 91 %–99 %) with a κ coefficient of 0.94 (P < 0.001). Without cumbersome and expensive instruments, this method is anticipated to be a promising alternative to diagnose MG infection, especially in resource-poor settings.

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使用重组酶聚合酶扩增法结合侧流条快速直观地检测生殖器支原体。
生殖器支原体(MG)是一种重要的性传播病原体,可导致男性尿道炎和女性盆腔炎。由于其复杂的生长要求和漫长的培养时间,在临床实验室培养支原体并不现实。在此,我们介绍了一种结合重组酶聚合酶扩增(RPA)和侧流(LF)条带的快速直观检测方法(MG-RPA-LF)。使用纯化的基因组 DNA 稀释系列,该方法的检测限(LoD)为每个反应 33.6 个基因组当量(GE)。通过检测 100 份泌尿生殖器拭子评估了该方法的临床性能。与同步扩增和检测法相比,我们的 MG-RPA-LF 检测法的灵敏度为 94%(95% CI,82%-98%),特异性为 100%(95% CI,91%-100%)。两种方法的总体一致性为 97 %(95 % CI,91 %-99 %),κ系数为 0.94(P<0.05)。
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来源期刊
Journal of microbiological methods
Journal of microbiological methods 生物-生化研究方法
CiteScore
4.30
自引率
4.50%
发文量
151
审稿时长
29 days
期刊介绍: The Journal of Microbiological Methods publishes scholarly and original articles, notes and review articles. These articles must include novel and/or state-of-the-art methods, or significant improvements to existing methods. Novel and innovative applications of current methods that are validated and useful will also be published. JMM strives for scholarship, innovation and excellence. This demands scientific rigour, the best available methods and technologies, correctly replicated experiments/tests, the inclusion of proper controls, calibrations, and the correct statistical analysis. The presentation of the data must support the interpretation of the method/approach. All aspects of microbiology are covered, except virology. These include agricultural microbiology, applied and environmental microbiology, bioassays, bioinformatics, biotechnology, biochemical microbiology, clinical microbiology, diagnostics, food monitoring and quality control microbiology, microbial genetics and genomics, geomicrobiology, microbiome methods regardless of habitat, high through-put sequencing methods and analysis, microbial pathogenesis and host responses, metabolomics, metagenomics, metaproteomics, microbial ecology and diversity, microbial physiology, microbial ultra-structure, microscopic and imaging methods, molecular microbiology, mycology, novel mathematical microbiology and modelling, parasitology, plant-microbe interactions, protein markers/profiles, proteomics, pyrosequencing, public health microbiology, radioisotopes applied to microbiology, robotics applied to microbiological methods,rumen microbiology, microbiological methods for space missions and extreme environments, sampling methods and samplers, soil and sediment microbiology, transcriptomics, veterinary microbiology, sero-diagnostics and typing/identification.
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