Synthetic biology of metabolic cycles for Enhanced CO2 capture and Sequestration

IF 4.5 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Bioorganic Chemistry Pub Date : 2024-09-06 DOI:10.1016/j.bioorg.2024.107774
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Abstract

In most organisms, the tri-carboxylic acid cycle (TCA cycle) is an essential metabolic system that is involved in both energy generation and carbon metabolism. Its uni-directionality, however, restricts its use in synthetic biology and carbon fixation. Here, it is describing the use of the modified TCA cycle, called the Tri-carboxylic acid Hooked to Ethylene by Enzyme Reactions and Amino acid Synthesis, the reductive tricarboxylic acid branch/4-hydroxybutyryl-CoA/ethylmalonyl-CoA/acetyl-CoA (THETA) cycle, in Escherichia coli for the purposes of carbon fixation and amino acid synthesis. Three modules make up the THETA cycle: (1) pyruvate to succinate transformation, (2) succinate to crotonyl-CoA change, and (3) crotonyl-CoA to acetyl-CoA and pyruvate change. It is presenting each module’s viability in vivo and showing how it integrates into the E. coli metabolic network to support growth on minimal medium without the need for outside supplementation. Enzyme optimization, route redesign, and heterologous expression were used to get over metabolic roadblocks and produce functional modules. Furthermore, the THETA cycle may be improved by including components of the Carbon-Efficient Tri-Carboxylic Acid Cycle (CETCH cycle) to improve carbon fixation. THETA cycle’s promise as a platform for applications in synthetic biology and carbon fixation.

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用于强化二氧化碳捕获和封存的代谢循环合成生物学
在大多数生物体中,三羧酸循环(TCA 循环)是一个重要的新陈代谢系统,同时参与能量生成和碳代谢。然而,它的单向性限制了它在合成生物学和碳固定中的应用。这里介绍的是在大肠杆菌中使用改进的 TCA 循环,即通过酶反应和氨基酸合成将三羧酸与乙烯挂钩的还原性三羧酸支/4-羟基丁酰-CoA/乙基丙二酰-CoA/乙酰-CoA 循环(THETA),以实现碳固定和氨基酸合成的目的。THETA 循环由三个模块组成:(1)丙酮酸到琥珀酸的转化;(2)琥珀酸到巴豆酰-CoA 的转化;(3)巴豆酰-CoA 到乙酰-CoA 和丙酮酸的转化。报告介绍了每个模块在体内的生存能力,并展示了其如何融入大肠杆菌代谢网络,从而无需外界补充即可在最小培养基上支持生长。酶优化、路线重新设计和异源表达被用来克服代谢障碍并产生功能模块。此外,THETA 循环还可以通过加入碳高效三羧酸循环(CETCH 循环)的成分来改进碳固定。THETA 循环有望成为合成生物学和碳固定的应用平台。
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来源期刊
Bioorganic Chemistry
Bioorganic Chemistry 生物-生化与分子生物学
CiteScore
9.70
自引率
3.90%
发文量
679
审稿时长
31 days
期刊介绍: Bioorganic Chemistry publishes research that addresses biological questions at the molecular level, using organic chemistry and principles of physical organic chemistry. The scope of the journal covers a range of topics at the organic chemistry-biology interface, including: enzyme catalysis, biotransformation and enzyme inhibition; nucleic acids chemistry; medicinal chemistry; natural product chemistry, natural product synthesis and natural product biosynthesis; antimicrobial agents; lipid and peptide chemistry; biophysical chemistry; biological probes; bio-orthogonal chemistry and biomimetic chemistry. For manuscripts dealing with synthetic bioactive compounds, the Journal requires that the molecular target of the compounds described must be known, and must be demonstrated experimentally in the manuscript. For studies involving natural products, if the molecular target is unknown, some data beyond simple cell-based toxicity studies to provide insight into the mechanism of action is required. Studies supported by molecular docking are welcome, but must be supported by experimental data. The Journal does not consider manuscripts that are purely theoretical or computational in nature. The Journal publishes regular articles, short communications and reviews. Reviews are normally invited by Editors or Editorial Board members. Authors of unsolicited reviews should first contact an Editor or Editorial Board member to determine whether the proposed article is within the scope of the Journal.
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