Software stewardship and advancement of a high-performance computing scientific application: QMCPACK

IF 6.2 2区 计算机科学 Q1 COMPUTER SCIENCE, THEORY & METHODS Future Generation Computer Systems-The International Journal of Escience Pub Date : 2024-08-31 DOI:10.1016/j.future.2024.107502
William F. Godoy , Steven E. Hahn , Michael M. Walsh , Philip W. Fackler , Jaron T. Krogel , Peter W. Doak , Paul R.C. Kent , Alfredo A. Correa , Ye Luo , Mark Dewing
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Abstract

We provide an overview of the software engineering efforts and their impact in QMCPACK, a production-level ab-initio Quantum Monte Carlo open-source code targeting high-performance computing (HPC) systems. Aspects included are: (i) strategic expansion of continuous integration (CI) targeting CPUs, using GitHub Actions own runners, and NVIDIA and AMD GPUs used in pre-exascale systems, (ii) incremental reduction of memory leaks using sanitizers, (iii) incorporation of Docker containers for CI and reproducibility, and (iv) refactoring efforts to improve maintainability, testing coverage, and memory lifetime management. We quantify the value of these improvements by providing metrics to illustrate the shift towards a predictive, rather than reactive, maintenance approach. Our goal, in documenting the impact of these efforts on QMCPACK, is to contribute to the body of knowledge on the importance of research software engineering (RSE) for the stewardship and advancement of community HPC codes to enable scientific discovery at scale.

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高性能计算科学应用软件的管理和改进:QMCPACK
QMCPACK 是一款针对高性能计算 (HPC) 系统的生产级非原位量子蒙特卡洛开源代码,我们将概述软件工程工作及其对 QMCPACK 的影响。其中包括以下方面(i) 针对 CPU 的持续集成 (CI) 战略扩展,使用 GitHub Actions 自带的运行程序,以及用于超大规模前系统的 NVIDIA 和 AMD GPU,(ii) 使用 sanitizers 逐步减少内存泄漏,(iii) 将 Docker 容器纳入 CI 和可重复性,以及 (iv) 重构工作,以提高可维护性、测试覆盖率和内存寿命管理。我们通过提供指标来量化这些改进的价值,以说明向预测性而非反应性维护方法的转变。我们记录了这些工作对 QMCPACK 的影响,目的是为研究软件工程(RSE)对管理和推进社区 HPC 代码的重要性的知识体系做出贡献,从而实现大规模的科学发现。
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来源期刊
CiteScore
19.90
自引率
2.70%
发文量
376
审稿时长
10.6 months
期刊介绍: Computing infrastructures and systems are constantly evolving, resulting in increasingly complex and collaborative scientific applications. To cope with these advancements, there is a growing need for collaborative tools that can effectively map, control, and execute these applications. Furthermore, with the explosion of Big Data, there is a requirement for innovative methods and infrastructures to collect, analyze, and derive meaningful insights from the vast amount of data generated. This necessitates the integration of computational and storage capabilities, databases, sensors, and human collaboration. Future Generation Computer Systems aims to pioneer advancements in distributed systems, collaborative environments, high-performance computing, and Big Data analytics. It strives to stay at the forefront of developments in grids, clouds, and the Internet of Things (IoT) to effectively address the challenges posed by these wide-area, fully distributed sensing and computing systems.
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