Control of DNA demethylation by superoxide anion in plant stem cells

IF 12.9 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Nature chemical biology Pub Date : 2024-09-12 DOI:10.1038/s41589-024-01737-8
Shiwen Wang, Min Liu, Dongping Hu, Zhicheng Dong, Zhong Zhao
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Abstract

Superoxide anion is thought to be a natural by-product with strong oxidizing ability in all living organisms and was recently found to accumulate in plant meristems to maintain stem cells in the shoot and undifferentiated meristematic cells in the root. Here we show that the DNA demethylase repressor of silencing 1 (ROS1) is one of the direct targets of superoxide in stem cells. The Fe–S clusters in ROS1 are oxidized by superoxide to activate its DNA glycosylase/lyase activity. We demonstrate that superoxide extensively participates in the establishment of active DNA demethylation in the Arabidopsis genome and that ARABIDOPSIS RESPONSE REGULATOR 12 acts downstream of ROS1-mediated superoxide signaling to maintain stem cell fate. Our results provide a mechanistic framework for superoxide control of the stem cell niche and demonstrate how redox and DNA demethylation interact to define stem cell fate in plants.

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超氧阴离子对植物干细胞 DNA 去甲基化的控制
超氧阴离子被认为是所有生物体内具有强氧化能力的天然副产物,最近发现超氧阴离子在植物分生组织中积累,以维持芽中的干细胞和根中未分化的分生组织细胞。在这里,我们发现DNA去甲基化酶沉默抑制因子1(ROS1)是干细胞中超氧化物的直接靶标之一。ROS1中的Fe-S簇被超氧化物氧化,从而激活其DNA糖基化酶/裂解酶活性。我们证明,超氧化物广泛参与了拟南芥基因组中活性DNA去甲基化的建立,并且拟南芥反应调节因子12在ROS1介导的超氧化物信号下游发挥作用,以维持干细胞的命运。我们的研究结果为超氧化物控制干细胞龛提供了一个机理框架,并证明了氧化还原和DNA去甲基化如何相互作用来确定植物干细胞的命运。
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来源期刊
Nature chemical biology
Nature chemical biology 生物-生化与分子生物学
CiteScore
23.90
自引率
1.40%
发文量
238
审稿时长
12 months
期刊介绍: Nature Chemical Biology stands as an esteemed international monthly journal, offering a prominent platform for the chemical biology community to showcase top-tier original research and commentary. Operating at the crossroads of chemistry, biology, and related disciplines, chemical biology utilizes scientific ideas and approaches to comprehend and manipulate biological systems with molecular precision. The journal embraces contributions from the growing community of chemical biologists, encompassing insights from chemists applying principles and tools to biological inquiries and biologists striving to comprehend and control molecular-level biological processes. We prioritize studies unveiling significant conceptual or practical advancements in areas where chemistry and biology intersect, emphasizing basic research, especially those reporting novel chemical or biological tools and offering profound molecular-level insights into underlying biological mechanisms. Nature Chemical Biology also welcomes manuscripts describing applied molecular studies at the chemistry-biology interface due to the broad utility of chemical biology approaches in manipulating or engineering biological systems. Irrespective of scientific focus, we actively seek submissions that creatively blend chemistry and biology, particularly those providing substantial conceptual or methodological breakthroughs with the potential to open innovative research avenues. The journal maintains a robust and impartial review process, emphasizing thorough chemical and biological characterization.
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