Effects of multistability, absorbing boundaries and growth on Turing pattern formation

Martina Oliver Huidobro, Robert G. Endres
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Abstract

Turing patterns are a fundamental concept in developmental biology, describing how homogeneous tissues develop into self-organized spatial patterns. However, the classical Turing mechanism, which relies on linear stability analysis, often fails to capture the complexities of real biological systems, such as multistability, non-linearities, growth, and boundary conditions. Here, we explore the impact of these factors on Turing pattern formation, contrasting linear stability analysis with numerical simulations based on a simple reaction-diffusion model, motivated by synthetic gene-regulatory pathways. We demonstrate how non-linearities introduce multistability, leading to unexpected pattern outcomes not predicted by the traditional Turing theory. The study also examines how growth and realistic boundary conditions influence pattern robustness, revealing that different growth regimes and boundary conditions can disrupt or stabilize pattern formation. Our findings are critical for understanding pattern formation in both natural and synthetic biological systems, providing insights into engineering robust patterns for applications in synthetic biology.
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多稳态、吸收边界和增长对图灵模式形成的影响
图灵模式是发育生物学中的一个基本概念,描述了均质组织如何发育成自组织空间模式。然而,依赖于线性稳定性分析的经典图灵机制往往无法捕捉真实生物系统的复杂性,例如多稳定性、非线性、生长和边界条件。在这里,我们探讨了这些因素对图灵模式形成的影响,将线性稳定性分析与基于简单反应-扩散模型的数值模拟进行对比,并以合成基因调控途径为动机。我们展示了非线性如何引入多稳定性,从而导致传统图灵理论无法预测的意外模式结果。研究还探讨了生长和现实边界条件如何影响模式的稳健性,揭示了不同的生长机制和边界条件可以破坏或稳定模式的形成。我们的研究结果对于理解自然和合成生物系统中的模式形成至关重要,为合成生物学应用中的稳健模式工程提供了启示。
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