Genetic diversity of female clones of pointed gourd (Trichosanthes dioica Roxb.) based on multivariate analysis and inter simple sequence repeat (ISSR) marker

IF 1.6 3区 农林科学 Q2 AGRONOMY Genetic Resources and Crop Evolution Pub Date : 2024-08-21 DOI:10.1007/s10722-024-02117-w
Gayatri Sinha, Subhradeep Pramanik, Praveen Kumar Maurya, Rajdeep Guha Mallick, Debanjan Baul, Tridip Bhattacharjee, Swadesh Banerjee, Subrata Dutta, Soumitra Chatterjee, Asit Kumar Mandal, Ivi Chakraborty, Pranab Hazra, Arup Chattopadhyay
{"title":"Genetic diversity of female clones of pointed gourd (Trichosanthes dioica Roxb.) based on multivariate analysis and inter simple sequence repeat (ISSR) marker","authors":"Gayatri Sinha, Subhradeep Pramanik, Praveen Kumar Maurya, Rajdeep Guha Mallick, Debanjan Baul, Tridip Bhattacharjee, Swadesh Banerjee, Subrata Dutta, Soumitra Chatterjee, Asit Kumar Mandal, Ivi Chakraborty, Pranab Hazra, Arup Chattopadhyay","doi":"10.1007/s10722-024-02117-w","DOIUrl":null,"url":null,"abstract":"<p>Pointed gourd (<i>Trichosanthes dioica</i> Roxb.) is a vegetatively propagated and an underutilised cucurbitaceous vegetable crop of India and Bangladesh. The crop has not yet been characterized based on distinctiveness, uniformity, and stability (DUS) characters. Clonal diversity has also not been properly assessed utilizing multivariate analysis and molecular marker. The present investigation was carried out to analyse genetic diversity of 34 female clones employing 29 qualitative and 27 quantitative characters for multivariate analysis and inter simple sequence repeat (ISSR) markers. Shannon–Wiener Diversity Index (H’) suggested that plant and fruit morphological characters viz., fruit shape, fruit apex shape at blossom end, number of secondary branches up to 20th node, leaf colour, petiole length, leaf blade length, vine length, fruit skin primary colour, and depth of leaf lobing should be considered when evaluating pointed gourd genotypes for DUS testing. The clones grouped in six clusters which do not correspond to origin locations. Principal components of variable traits for number of secondary branches up to 20th node, leaf blade length, leaf blade width, leaf blade size, petiole length, number of leaf lobes, vine length, node at which 1st female flower appeared, days to 50% flowering and fruit weight had eigen values &gt; 1 and accounting for 81.06% of total variation. Based on average values, multivariate, and molecular analysis of economic traits, the female clones, ‘BCPG-4’ and ‘Swarna Alaukik’ emerged as potential and diverse genetic stocks for future breeding programme. Classification of the female clones and their diversity could conveniently be analysed using ISSR markers. We could frame the possible ways of future improvement strategies of pointed gourd.</p>","PeriodicalId":12467,"journal":{"name":"Genetic Resources and Crop Evolution","volume":"81 1","pages":""},"PeriodicalIF":1.6000,"publicationDate":"2024-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Genetic Resources and Crop Evolution","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.1007/s10722-024-02117-w","RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"AGRONOMY","Score":null,"Total":0}
引用次数: 0

Abstract

Pointed gourd (Trichosanthes dioica Roxb.) is a vegetatively propagated and an underutilised cucurbitaceous vegetable crop of India and Bangladesh. The crop has not yet been characterized based on distinctiveness, uniformity, and stability (DUS) characters. Clonal diversity has also not been properly assessed utilizing multivariate analysis and molecular marker. The present investigation was carried out to analyse genetic diversity of 34 female clones employing 29 qualitative and 27 quantitative characters for multivariate analysis and inter simple sequence repeat (ISSR) markers. Shannon–Wiener Diversity Index (H’) suggested that plant and fruit morphological characters viz., fruit shape, fruit apex shape at blossom end, number of secondary branches up to 20th node, leaf colour, petiole length, leaf blade length, vine length, fruit skin primary colour, and depth of leaf lobing should be considered when evaluating pointed gourd genotypes for DUS testing. The clones grouped in six clusters which do not correspond to origin locations. Principal components of variable traits for number of secondary branches up to 20th node, leaf blade length, leaf blade width, leaf blade size, petiole length, number of leaf lobes, vine length, node at which 1st female flower appeared, days to 50% flowering and fruit weight had eigen values > 1 and accounting for 81.06% of total variation. Based on average values, multivariate, and molecular analysis of economic traits, the female clones, ‘BCPG-4’ and ‘Swarna Alaukik’ emerged as potential and diverse genetic stocks for future breeding programme. Classification of the female clones and their diversity could conveniently be analysed using ISSR markers. We could frame the possible ways of future improvement strategies of pointed gourd.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
基于多元分析和简单序列重复标记(ISSR)的尖嘴葫芦(Trichosanthes dioica Roxb.)雌性克隆的遗传多样性
尖头葫芦(Trichosanthes dioica Roxb.)是一种无性繁殖的葫芦科蔬菜作物,在印度和孟加拉国未得到充分利用。该作物尚未根据独特性、均匀性和稳定性(DUS)特征进行定性。也没有利用多元分析和分子标记对克隆多样性进行适当评估。本研究采用 29 个定性特征和 27 个定量特征进行多元分析,并利用简单序列重复(ISSR)标记分析了 34 个雌性克隆的遗传多样性。香农-维纳多样性指数(H')表明,在评估尖嘴葫芦基因型进行 DUS 测试时,应考虑植物和果实的形态特征,即果实形状、花端果顶形状、第 20 节以下的二次分枝数、叶色、叶柄长度、叶片长度、藤蔓长度、果皮原色和叶裂深度。克隆分为六个群,与原产地不一致。第 20 节以下二次分枝数、叶片长度、叶片宽度、叶片大小、叶柄长度、叶裂片数、藤蔓长度、第 1 朵雌花出现的节位、50%开花天数和果重等变异性状的主成分特征值为 1,占总变异的 81.06%。根据经济性状的平均值、多变量和分子分析,雌性克隆 "BCPG-4 "和 "Swarna Alaukik "成为未来育种计划中具有潜力的多样化遗传种群。使用 ISSR 标记可以方便地分析雌性克隆的分类及其多样性。我们可以为尖头葫芦未来的改良战略制定可能的方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Genetic Resources and Crop Evolution
Genetic Resources and Crop Evolution 农林科学-农艺学
CiteScore
4.10
自引率
10.00%
发文量
178
审稿时长
3 months
期刊介绍: Genetic Resources and Crop Evolution is devoted to all aspects of plant genetic resources research. It publishes original articles in the fields of taxonomical, morphological, physiological, biochemical, genetical, cytological or ethnobotanical research of genetic resources and includes contributions to gene-bank management in a broad sense, that means to collecting, maintenance, evaluation, storage and documentation. Areas of particular interest include: -crop evolution -domestication -crop-weed relationships -related wild species -history of cultivated plants including palaeoethnobotany. Genetic Resources and Crop Evolution also publishes short communications, e.g. newly described crop taxa, nomenclatural notes, reports of collecting missions, evaluation results of gene-bank material etc. as well as book reviews of important publications in the field of genetic resources. Every volume will contain some review articles on actual problems. The journal is the internationalized continuation of the German periodical Die Kulturpflanze, published formerly by the Institute of Plant Genetics and Crop Plant Research at Gatersleben, Germany. All contributions are in the English language and are subject to peer reviewing.
期刊最新文献
Integrated transcriptomic data reveal a regulatory network for the lignin biosynthesis in Nicotiana tabacum upon drought stress A genome sequence resource for the European chestnut (Castanea sativa Mill.) and the development of genic microsatellite markers Phenotypic selection for improvement of Spondias tuberosa trees in on-farm biodiversity conservation The leaf surface micromorphology of plants obtained from crosses between Elymus farctus and the stable form × Trititrigia cziczinii × wheat cultivar ‘Botanicheskaya 3’ Genome-wide identification of the sugar beet (Beta vulgaris L.) DMP gene family and its potential role in abiotic stress
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1