Homeostasis Patterns

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2024-08-27 DOI:10.1137/23m158807x
William Duncan, Fernando Antoneli, Janet Best, Martin Golubitsky, Jiaxin Jin, H. Frederik Nijhout, Mike Reed, Ian Stewart
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Abstract

SIAM Journal on Applied Dynamical Systems, Volume 23, Issue 3, Page 2262-2292, September 2024.
Abstract.Homeostasis is a regulatory mechanism that keeps a specific variable close to a set value as other variables fluctuate. The notion of homeostasis can be rigorously formulated when the model of interest is represented as an input-output network, with distinguished input and output nodes, and the dynamics of the network determines the corresponding input-output function of the system. In this context, homeostasis can be defined as an “infinitesimal” notion, namely, the derivative of the input-output function is zero at an isolated point. Combining this approach with graph-theoretic ideas from combinatorial matrix theory provides a systematic framework for calculating homeostasis points in models and classifying the different homeostasis types in input-output networks. In this paper we extend this theory by introducing the notion of a homeostasis pattern, defined as a set of nodes, in addition to the output node, that are simultaneously infinitesimally homeostatic. We prove that each homeostasis type leads to a distinct homeostasis pattern. Moreover, we describe all homeostasis patterns supported by a given input-output network in terms of a combinatorial structure associated to the input-output network. We call this structure the homeostasis pattern network.
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平衡模式
SIAM 应用动力系统期刊》,第 23 卷第 3 期,第 2262-2292 页,2024 年 9 月。 摘要:平衡是一种调节机制,它能在其他变量波动时保持特定变量接近设定值。如果将相关模型表示为一个输入输出网络,并区分输入和输出节点,且该网络的动态变化决定了系统相应的输入输出函数,那么就可以严格地表述平衡的概念。在这种情况下,平衡可定义为 "无穷小 "概念,即输入-输出函数的导数在孤立点为零。将这一方法与组合矩阵理论中的图论思想相结合,可为计算模型中的同调点和分类输入-输出网络中的不同同调类型提供一个系统框架。在本文中,我们对这一理论进行了扩展,引入了同态模式的概念,将其定义为除输出节点外,同时具有无限同态性的一组节点。我们证明,每种同态类型都会导致一种不同的同态模式。此外,我们还通过与输入输出网络相关联的组合结构来描述特定输入输出网络支持的所有同态模式。我们称这种结构为平衡模式网络。
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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