Effective Segmentation of Post-Treatment Gliomas Using Simple Approaches: Artificial Sequence Generation and Ensemble Models

Heejong Kim, Leo Milecki, Mina C Moghadam, Fengbei Liu, Minh Nguyen, Eric Qiu, Abhishek Thanki, Mert R Sabuncu
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Abstract

Segmentation is a crucial task in the medical imaging field and is often an important primary step or even a prerequisite to the analysis of medical volumes. Yet treatments such as surgery complicate the accurate delineation of regions of interest. The BraTS Post-Treatment 2024 Challenge published the first public dataset for post-surgery glioma segmentation and addresses the aforementioned issue by fostering the development of automated segmentation tools for glioma in MRI data. In this effort, we propose two straightforward approaches to enhance the segmentation performances of deep learning-based methodologies. First, we incorporate an additional input based on a simple linear combination of the available MRI sequences input, which highlights enhancing tumors. Second, we employ various ensembling methods to weigh the contribution of a battery of models. Our results demonstrate that these approaches significantly improve segmentation performance compared to baseline models, underscoring the effectiveness of these simple approaches in improving medical image segmentation tasks.
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使用简单方法有效分割治疗后胶质瘤:人工序列生成和集合模型
分割是医学影像领域的一项关键任务,通常是重要的第一步,甚至是分析医学图像的先决条件。然而,手术等治疗方法使得准确划分相关区域变得更加复杂。BraTS 治疗后 2024 挑战赛发布了首个用于手术后胶质瘤分割的公开数据集,并通过促进磁共振成像数据中胶质瘤自动分割工具的开发来解决上述问题。在这项工作中,我们提出了两种直接的方法来提高基于深度学习的方法的分割性能。首先,我们在现有核磁共振成像序列输入的简单线性组合基础上加入了额外的输入,从而突出了增大的肿瘤。其次,我们采用各种集合方法来权衡一系列模型的贡献。我们的结果表明,与基线模型相比,这些方法显著提高了分割性能,凸显了这些简单方法在改进医学图像分割任务方面的有效性。
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