Dissipative self-assembly of patchy particles under nonequilibrium drive: a computational study

Shubhadeep Nag, Gili Bisker
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Abstract

Inspired by biology and implemented using nanotechnology, the self-assembly of patchy particles has emerged as a pivotal mechanism for constructing complex structures that mimic natural systems with diverse functionalities. Here, we explore the dissipative self-assembly of patchy particles under nonequilibrium conditions, with the aim of overcoming the constraints imposed by equilibrium assembly. Utilizing extensive Monte Carlo (MC) and Molecular Dynamics (MD) simulations, we provide insight into the effects of external forces that mirror natural and chemical processes on the assembly rates and the stability of the resulting assemblies comprising $8$, $10$, and $13$ patchy particles. Implemented by a favorable bond-promoting drive in MC or a pulsed square wave potential in MD, our simulations reveal the role these external drives play in accelerating assembly kinetics and enhancing structural stability, evidenced by a decrease in the time to first assembly and an increase in the duration the system remains in an assembled state. Through the analysis of an order parameter, entropy production, bond dynamics, and interparticle forces, we unravel the underlying mechanisms driving these advancements. We also validated our key findings by simulating a larger system of $100$ patchy particles. Our comprehensive results not only shed light on the impact of external stimuli on self-assembly processes but also open a promising pathway for expanding the application by leveraging patchy particles for novel nanostructures.
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非平衡驱动下斑块颗粒的耗散自组装:计算研究
受生物学启发并利用纳米技术实现的斑块状粒子自组装,已成为构建复杂结构的关键机制,这种复杂结构可模仿具有多种功能的自然系统。在此,我们探讨了非平衡条件下斑块颗粒的耗散自组装,旨在克服平衡组装所带来的限制。通过大量的蒙特卡罗(MC)和分子动力学(MD)模拟,我们深入了解了反映自然和化学过程的外力对由 8 美元、10 美元和 13 美元斑块状粒子组成的组装速率和稳定性的影响。在 MC 中通过有利的键促进驱动或在 MD 中通过脉冲方波电势来实现,我们的模拟揭示了这些外部驱动在加速组装动力学和提高结构稳定性方面所起的作用,具体表现为首次组装时间的缩短和系统保持组装状态时间的延长。通过分析阶次参数、熵产生、键动力学和粒子间作用力,我们揭示了驱动这些进步的内在机制。我们还通过模拟一个由 100 美元斑点粒子组成的更大系统,验证了我们的主要发现。我们的综合结果不仅揭示了外部刺激对自我组装过程的影响,而且还为利用斑块状微粒制造新型纳米结构从而扩大应用开辟了一条前景广阔的道路。
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