Fanjie Xu, Wentao Guo, Feng Wang, Lin Yao, Hongshuai Wang, Fujie Tang, Zhifeng Gao, Linfeng Zhang, Weinan E, Zhong-Qun Tian, Jun Cheng
{"title":"Towards a Unified Benchmark and Framework for Deep Learning-Based Prediction of Nuclear Magnetic Resonance Chemical Shifts","authors":"Fanjie Xu, Wentao Guo, Feng Wang, Lin Yao, Hongshuai Wang, Fujie Tang, Zhifeng Gao, Linfeng Zhang, Weinan E, Zhong-Qun Tian, Jun Cheng","doi":"arxiv-2408.15681","DOIUrl":null,"url":null,"abstract":"The study of structure-spectrum relationships is essential for spectral\ninterpretation, impacting structural elucidation and material design.\nPredicting spectra from molecular structures is challenging due to their\ncomplex relationships. Herein, we introduce NMRNet, a deep learning framework\nusing the SE(3) Transformer for atomic environment modeling, following a\npre-training and fine-tuning paradigm. To support the evaluation of NMR\nchemical shift prediction models, we have established a comprehensive benchmark\nbased on previous research and databases, covering diverse chemical systems.\nApplying NMRNet to these benchmark datasets, we achieve state-of-the-art\nperformance in both liquid-state and solid-state NMR datasets, demonstrating\nits robustness and practical utility in real-world scenarios. This marks the\nfirst integration of solid and liquid state NMR within a unified model\narchitecture, highlighting the need for domainspecific handling of different\natomic environments. Our work sets a new standard for NMR prediction, advancing\ndeep learning applications in analytical and structural chemistry.","PeriodicalId":501369,"journal":{"name":"arXiv - PHYS - Computational Physics","volume":"22 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - PHYS - Computational Physics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2408.15681","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
The study of structure-spectrum relationships is essential for spectral
interpretation, impacting structural elucidation and material design.
Predicting spectra from molecular structures is challenging due to their
complex relationships. Herein, we introduce NMRNet, a deep learning framework
using the SE(3) Transformer for atomic environment modeling, following a
pre-training and fine-tuning paradigm. To support the evaluation of NMR
chemical shift prediction models, we have established a comprehensive benchmark
based on previous research and databases, covering diverse chemical systems.
Applying NMRNet to these benchmark datasets, we achieve state-of-the-art
performance in both liquid-state and solid-state NMR datasets, demonstrating
its robustness and practical utility in real-world scenarios. This marks the
first integration of solid and liquid state NMR within a unified model
architecture, highlighting the need for domainspecific handling of different
atomic environments. Our work sets a new standard for NMR prediction, advancing
deep learning applications in analytical and structural chemistry.