Mariana Sarkociová Remešíková, Peter Sarkoci, Mária Trnovská
{"title":"Length-minimizing LED Trees","authors":"Mariana Sarkociová Remešíková, Peter Sarkoci, Mária Trnovská","doi":"arxiv-2408.11385","DOIUrl":null,"url":null,"abstract":"In this paper, we introduce a specific type of Euclidean tree called LED\n(Leaves of Equal Depth) tree. LED trees can be used in computational phylogeny,\nsince they are a natural representative of the time evolution of a set of\nspecies in a feature space. This work is focused on LED trees that are length\nminimizers for a given set of leaves (species) and a given isomorphism type\n(the hierarchical structure of ancestors). The underlying minimization problem\ncan be seen as a variant of the classical Euclidean Steiner tree problem. Even\nthough it has a convex objective function, it is rather non-trivial, since it\nhas a non-convex feasible set. The main contribution of this paper is that we\nprovide a uniqueness result for this problem. Moreover, we explore some\ngeometrical and topological properties of the feasible set and we prove several\ngeometrical characteristics of the length minimizers that are analogical to the\nproperties of Steiner trees. At the end, we show a simple example of an\napplication in historical linguistics.","PeriodicalId":501044,"journal":{"name":"arXiv - QuanBio - Populations and Evolution","volume":"10 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Populations and Evolution","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2408.11385","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
In this paper, we introduce a specific type of Euclidean tree called LED
(Leaves of Equal Depth) tree. LED trees can be used in computational phylogeny,
since they are a natural representative of the time evolution of a set of
species in a feature space. This work is focused on LED trees that are length
minimizers for a given set of leaves (species) and a given isomorphism type
(the hierarchical structure of ancestors). The underlying minimization problem
can be seen as a variant of the classical Euclidean Steiner tree problem. Even
though it has a convex objective function, it is rather non-trivial, since it
has a non-convex feasible set. The main contribution of this paper is that we
provide a uniqueness result for this problem. Moreover, we explore some
geometrical and topological properties of the feasible set and we prove several
geometrical characteristics of the length minimizers that are analogical to the
properties of Steiner trees. At the end, we show a simple example of an
application in historical linguistics.
本文介绍了一种特殊类型的欧氏树,称为 LED(等深树叶)树。LED 树可以用于计算系统发育,因为它们是一组物种在特征空间中时间演化的自然代表。这项工作的重点是针对给定树叶集(物种)和给定同构类型(祖先的层次结构)的长度最小化 LED 树。基本的最小化问题可以看作是经典欧氏斯坦纳树问题的变体。尽管它有一个凸目标函数,但由于它有一个非凸可行集,因此并不简单。本文的主要贡献在于我们提供了该问题的唯一性结果。此外,我们还探讨了可行集的一些几何和拓扑性质,并证明了长度最小值的一些几何特征,这些特征与斯坦纳树的性质类似。最后,我们展示了一个在历史语言学中应用的简单例子。