AFM-YOLOv8s: An Accurate, Fast, and Highly Robust Model for Detection of Sporangia of Plasmopara viticola with Various Morphological Variants.

IF 7.6 1区 农林科学 Q1 AGRONOMY Plant Phenomics Pub Date : 2024-09-11 DOI:10.34133/plantphenomics.0246
Changqing Yan,Zeyun Liang,Ling Yin,Shumei Wei,Qi Tian,Ying Li,Han Cheng,Jindong Liu,Qiang Yu,Gang Zhao,Junjie Qu
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Abstract

Monitoring spores is crucial for predicting and preventing fungal- or oomycete-induced diseases like grapevine downy mildew. However, manual spore or sporangium detection using microscopes is time-consuming and labor-intensive, often resulting in low accuracy and slow processing speed. Emerging deep learning models like YOLOv8 aim to rapidly detect objects accurately but struggle with efficiency and accuracy when identifying various sporangia formations amidst complex backgrounds. To address these challenges, we developed an enhanced YOLOv8s, namely, AFM-YOLOv8s, by introducing an Adaptive Cross Fusion module, a lightweight feature extraction module FasterCSP (Faster Cross-Stage Partial Module), and a novel loss function MPDIoU (Minimum Point Distance Intersection over Union). AFM-YOLOv8s replaces the C2f module with FasterCSP, a more efficient feature extraction module, to reduce model parameter size and overall depth. In addition, we developed and integrated an Adaptive Cross Fusion Feature Pyramid Network to enhance the fusion of multiscale features within the YOLOv8 architecture. Last, we utilized the MPDIoU loss function to improve AFM-YOLOv8s' ability to locate bounding boxes and learn object spatial localization. Experimental results demonstrated AFM-YOLOv8s' effectiveness, achieving 91.3% accuracy (mean average precision at 50% IoU) on our custom grapevine downy mildew sporangium dataset-a notable improvement of 2.7% over the original YOLOv8 algorithm. FasterCSP reduced model complexity and size, enhanced deployment versatility, and improved real-time detection, chosen over C2f for easier integration despite minor accuracy trade-off. Currently, the AFM-YOLOv8s model is running as a backend algorithm in an open web application, providing valuable technical support for downy mildew prevention and control efforts and fungicide resistance studies.
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AFM-YOLOv8s:用于检测具有各种形态变异的葡萄孢子囊的准确、快速和高度稳健的模型。
监测孢子对于预测和预防葡萄霜霉病等真菌或卵菌引起的病害至关重要。然而,使用显微镜手动检测孢子或孢子囊既耗时又耗力,往往导致准确率低、处理速度慢。新出现的深度学习模型(如 YOLOv8)旨在快速准确地检测物体,但在复杂背景中识别各种孢子囊形态时,效率和准确性都难以保证。为了应对这些挑战,我们开发了增强型 YOLOv8s,即 AFM-YOLOv8s,引入了自适应交叉融合模块、轻量级特征提取模块 FasterCSP(更快的交叉阶段部分模块)和新颖的损失函数 MPDIoU(最小点距离交叉联合)。AFM-YOLOv8s 使用更高效的特征提取模块 FasterCSP 取代了 C2f 模块,以减少模型参数大小和整体深度。此外,我们还开发并集成了自适应交叉融合特征金字塔网络,以增强 YOLOv8 架构中的多尺度特征融合。最后,我们利用 MPDIoU 损失函数提高了 AFM-YOLOv8 定位边界框和学习物体空间定位的能力。实验结果证明了 AFM-YOLOv8s 的有效性,在我们定制的葡萄霜霉病孢子囊数据集上实现了 91.3% 的准确率(50% IoU 时的平均精度),比原始 YOLOv8 算法显著提高了 2.7%。FasterCSP 降低了模型的复杂性和大小,增强了部署的通用性,提高了实时检测能力,尽管在准确性上略有折衷,但它比 C2f 更易于集成。目前,AFM-YOLOv8s 模型正作为一个开放式网络应用程序的后台算法运行,为霜霉病防控工作和杀菌剂抗性研究提供宝贵的技术支持。
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来源期刊
Plant Phenomics
Plant Phenomics Multiple-
CiteScore
8.60
自引率
9.20%
发文量
26
审稿时长
14 weeks
期刊介绍: Plant Phenomics is an Open Access journal published in affiliation with the State Key Laboratory of Crop Genetics & Germplasm Enhancement, Nanjing Agricultural University (NAU) and published by the American Association for the Advancement of Science (AAAS). Like all partners participating in the Science Partner Journal program, Plant Phenomics is editorially independent from the Science family of journals. The mission of Plant Phenomics is to publish novel research that will advance all aspects of plant phenotyping from the cell to the plant population levels using innovative combinations of sensor systems and data analytics. Plant Phenomics aims also to connect phenomics to other science domains, such as genomics, genetics, physiology, molecular biology, bioinformatics, statistics, mathematics, and computer sciences. Plant Phenomics should thus contribute to advance plant sciences and agriculture/forestry/horticulture by addressing key scientific challenges in the area of plant phenomics. The scope of the journal covers the latest technologies in plant phenotyping for data acquisition, data management, data interpretation, modeling, and their practical applications for crop cultivation, plant breeding, forestry, horticulture, ecology, and other plant-related domains.
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