Whole genome sequence data of a lignocellulose-degrading bacterium, Arthrobacter koreensis BSB isolated from the soils of Santiniketan, India

IF 1 Q3 MULTIDISCIPLINARY SCIENCES Data in Brief Pub Date : 2024-09-12 DOI:10.1016/j.dib.2024.110915

Binoy Kumar Show , Andrew B. Ross , Raju Biswas , Shibani Chaudhury , Srinivasan Balachandran

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Abstract

A draft genome sequence of an isolate of Arthrobacter koreensis BSB from Santiniketan soil is being published. A. koreensis BSB produces lignocellulases, which are crucial in plant biomass degradation. It is a potential source of enzymes of digestive importance, especially lignocellulases. Genomic DNA was isolated from a single bacterial colony using a QIAgen Blood and Tissue kit (QIAgen Inc., Canada). Illumina HiSeq X performed the DNA sequence, employing 2 × 150 paired-end chemistry, and 8,725,587 reads were obtained, corresponding to a sequence coverage of 755X. The draft genome assembly formed 15 contigs > 200 base pairs in length (N50 value= 446, 958 and L50= 3). The genome size is 3,466,004 base pairs with an average GC percentage of 65.94 %. Annotation and prediction of genes were carried out with Prokka v.1.14.6, and 3,172 CDS, 3236 genes, 58 tRNA genes, 4 rRNA genes, and 2 tmRNA genes were identified.

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从印度 Santiniketan 土壤中分离出的木质纤维素降解细菌 Arthrobacter koreensis BSB 的全基因组序列数据

从桑提尼克坦土壤中分离出的朝鲜节杆菌 BSB 的基因组序列草案即将公布。A. koreensis BSB 能产生木质纤维素酶，这在植物生物质降解过程中至关重要。它是重要消化酶（尤其是木质纤维素酶）的潜在来源。使用 QIAgen 血液和组织试剂盒（QIAgen Inc.）Illumina HiSeq X 采用 2 × 150 成对端化学方法进行了 DNA 测序，获得了 8,725,587 个读数，相当于 755X 的序列覆盖率。基因组组装草案形成了 15 个长度为 200 碱基对的等位组（N50 值= 446，958，L50= 3）。基因组大小为 3,466,004 碱基对，平均 GC 百分比为 65.94 %。利用 Prokka v.1.14.6 对基因进行了注释和预测，确定了 3172 个 CDS、3236 个基因、58 个 tRNA 基因、4 个 rRNA 基因和 2 个 tmRNA 基因。

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来源期刊

Data in Brief MULTIDISCIPLINARY SCIENCES-

CiteScore

3.10

自引率

0.00%

发文量

996

审稿时长

70 days

期刊介绍： Data in Brief provides a way for researchers to easily share and reuse each other''s datasets by publishing data articles that: -Thoroughly describe your data, facilitating reproducibility. -Make your data, which is often buried in supplementary material, easier to find. -Increase traffic towards associated research articles and data, leading to more citations. -Open up doors for new collaborations. Because you never know what data will be useful to someone else, Data in Brief welcomes submissions that describe data from all research areas.