{"title":"Genome-wide identification of the sugar beet (Beta vulgaris L.) DMP gene family and its potential role in abiotic stress","authors":"Pingan Han, Yue Chang, Kuangang Tang, Liang Wang, Zhijun Xiu, Jing Yang, Haibo Shi, Yahui Liang, Ruifen Sun, Shaofeng Su, Ziqiang Zhang, Zengjuan Fu, Shangmin Zhao, Yuanyuan E, Wenzhe Zheng, Hui Zhang, Bizhou Zhang, Mengyuan Sun, Xinrong Wu, Xiaodong Li","doi":"10.1007/s10722-024-02169-y","DOIUrl":null,"url":null,"abstract":"<p>DMP, a plant-specific membrane protein, plays a role in plant reproductive development and senescence processes. However, there is a lack of reported research on the distribution and function of the <i>DMP</i> gene family in sugar beet. In this study, bioinformatics methods were utilized to identify nine <i>BvDMP</i> family genes that were found on four chromosomes of the genome. The physicochemical properties, phylogeny, subcellular localization, gene structure, promoter regions, and replication events of these nine family genes were analyzed. RT‒qPCR was utilized to analyze the expression patterns of the nine genes within the DMP family across different tissues of sugar beet, as well as their responses to various abiotic stresses. The phylogenetic analysis indicated that all the <i>BvDMP</i> clusters could be categorized into six branches. <i>BvDMP</i>s were found to contain diverse cis-acting elements that play a role in plant responses to abiotic stresses and various phytohormones. Furthermore, expression analysis highlighted <i>BvDMP9</i> as the most highly upregulated gene in reproductive organs among all members of the sugar beet <i>DMP</i> gene family. This finding suggests the potential involvement of <i>BvDMP9</i> in the reproductive processes of sugar beet, there by providing a basis for further exploration of the functions and mechanisms of this gene family.</p>","PeriodicalId":12467,"journal":{"name":"Genetic Resources and Crop Evolution","volume":null,"pages":null},"PeriodicalIF":1.6000,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Genetic Resources and Crop Evolution","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.1007/s10722-024-02169-y","RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"AGRONOMY","Score":null,"Total":0}
引用次数: 0
Abstract
DMP, a plant-specific membrane protein, plays a role in plant reproductive development and senescence processes. However, there is a lack of reported research on the distribution and function of the DMP gene family in sugar beet. In this study, bioinformatics methods were utilized to identify nine BvDMP family genes that were found on four chromosomes of the genome. The physicochemical properties, phylogeny, subcellular localization, gene structure, promoter regions, and replication events of these nine family genes were analyzed. RT‒qPCR was utilized to analyze the expression patterns of the nine genes within the DMP family across different tissues of sugar beet, as well as their responses to various abiotic stresses. The phylogenetic analysis indicated that all the BvDMP clusters could be categorized into six branches. BvDMPs were found to contain diverse cis-acting elements that play a role in plant responses to abiotic stresses and various phytohormones. Furthermore, expression analysis highlighted BvDMP9 as the most highly upregulated gene in reproductive organs among all members of the sugar beet DMP gene family. This finding suggests the potential involvement of BvDMP9 in the reproductive processes of sugar beet, there by providing a basis for further exploration of the functions and mechanisms of this gene family.
期刊介绍:
Genetic Resources and Crop Evolution is devoted to all aspects of plant genetic resources research. It publishes original articles in the fields of taxonomical, morphological, physiological, biochemical, genetical, cytological or ethnobotanical research of genetic resources and includes contributions to gene-bank management in a broad sense, that means to collecting, maintenance, evaluation, storage and documentation.
Areas of particular interest include:
-crop evolution
-domestication
-crop-weed relationships
-related wild species
-history of cultivated plants including palaeoethnobotany.
Genetic Resources and Crop Evolution also publishes short communications, e.g. newly described crop taxa, nomenclatural notes, reports of collecting missions, evaluation results of gene-bank material etc. as well as book reviews of important publications in the field of genetic resources.
Every volume will contain some review articles on actual problems. The journal is the internationalized continuation of the German periodical Die Kulturpflanze, published formerly by the Institute of Plant Genetics and Crop Plant Research at Gatersleben, Germany.
All contributions are in the English language and are subject to peer reviewing.