Genome-wide identification of the sugar beet (Beta vulgaris L.) DMP gene family and its potential role in abiotic stress

IF 1.6 3区 农林科学 Q2 AGRONOMY Genetic Resources and Crop Evolution Pub Date : 2024-09-16 DOI:10.1007/s10722-024-02169-y
Pingan Han, Yue Chang, Kuangang Tang, Liang Wang, Zhijun Xiu, Jing Yang, Haibo Shi, Yahui Liang, Ruifen Sun, Shaofeng Su, Ziqiang Zhang, Zengjuan Fu, Shangmin Zhao, Yuanyuan E, Wenzhe Zheng, Hui Zhang, Bizhou Zhang, Mengyuan Sun, Xinrong Wu, Xiaodong Li
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Abstract

DMP, a plant-specific membrane protein, plays a role in plant reproductive development and senescence processes. However, there is a lack of reported research on the distribution and function of the DMP gene family in sugar beet. In this study, bioinformatics methods were utilized to identify nine BvDMP family genes that were found on four chromosomes of the genome. The physicochemical properties, phylogeny, subcellular localization, gene structure, promoter regions, and replication events of these nine family genes were analyzed. RT‒qPCR was utilized to analyze the expression patterns of the nine genes within the DMP family across different tissues of sugar beet, as well as their responses to various abiotic stresses. The phylogenetic analysis indicated that all the BvDMP clusters could be categorized into six branches. BvDMPs were found to contain diverse cis-acting elements that play a role in plant responses to abiotic stresses and various phytohormones. Furthermore, expression analysis highlighted BvDMP9 as the most highly upregulated gene in reproductive organs among all members of the sugar beet DMP gene family. This finding suggests the potential involvement of BvDMP9 in the reproductive processes of sugar beet, there by providing a basis for further exploration of the functions and mechanisms of this gene family.

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甜菜(Beta vulgaris L.)DMP 基因家族的全基因组鉴定及其在非生物胁迫中的潜在作用
DMP 是一种植物特异性膜蛋白,在植物生殖发育和衰老过程中发挥作用。然而,有关甜菜中 DMP 基因家族的分布和功能的研究报道却很少。本研究利用生物信息学方法鉴定了甜菜基因组四条染色体上的九个 BvDMP 家族基因。研究分析了这九个家族基因的理化性质、系统发育、亚细胞定位、基因结构、启动子区域和复制事件。利用 RT-qPCR 分析了 DMP 家族九个基因在甜菜不同组织中的表达模式,以及它们对各种非生物胁迫的反应。系统进化分析表明,所有 BvDMP 簇可分为六个分支。研究发现,BvDMPs 包含多种顺式作用元件,这些元件在植物对非生物胁迫和各种植物激素的反应中发挥作用。此外,表达分析显示,在甜菜 DMP 基因家族的所有成员中,BvDMP9 是生殖器官中上调率最高的基因。这一发现表明 BvDMP9 可能参与了甜菜的生殖过程,从而为进一步探索该基因家族的功能和机制奠定了基础。
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来源期刊
Genetic Resources and Crop Evolution
Genetic Resources and Crop Evolution 农林科学-农艺学
CiteScore
4.10
自引率
10.00%
发文量
178
审稿时长
3 months
期刊介绍: Genetic Resources and Crop Evolution is devoted to all aspects of plant genetic resources research. It publishes original articles in the fields of taxonomical, morphological, physiological, biochemical, genetical, cytological or ethnobotanical research of genetic resources and includes contributions to gene-bank management in a broad sense, that means to collecting, maintenance, evaluation, storage and documentation. Areas of particular interest include: -crop evolution -domestication -crop-weed relationships -related wild species -history of cultivated plants including palaeoethnobotany. Genetic Resources and Crop Evolution also publishes short communications, e.g. newly described crop taxa, nomenclatural notes, reports of collecting missions, evaluation results of gene-bank material etc. as well as book reviews of important publications in the field of genetic resources. Every volume will contain some review articles on actual problems. The journal is the internationalized continuation of the German periodical Die Kulturpflanze, published formerly by the Institute of Plant Genetics and Crop Plant Research at Gatersleben, Germany. All contributions are in the English language and are subject to peer reviewing.
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