16TMCONF543: An Automatically Generated Data Set of Conformational Energies of Transition Metal Complexes Relevant to Catalysis

IF 2.5 3区 化学 Q2 CHEMISTRY, INORGANIC & NUCLEAR Organometallics Pub Date : 2024-09-17 DOI:10.1021/acs.organomet.4c00246
Arseniy A. Otlyotov, Timofey P. Rozov, Andrey D. Moshchenkov, Yury Minenkov
{"title":"16TMCONF543: An Automatically Generated Data Set of Conformational Energies of Transition Metal Complexes Relevant to Catalysis","authors":"Arseniy A. Otlyotov, Timofey P. Rozov, Andrey D. Moshchenkov, Yury Minenkov","doi":"10.1021/acs.organomet.4c00246","DOIUrl":null,"url":null,"abstract":"A database of conformational energies (CEs) of 16 transition metal (TM) complexes relevant to catalysis is automatically created by employing the new conformer generator program Uniconf. The generation procedure starts from an arbitrary high-energy structure and consistently produces conformer(s) similar to or even more energetically favorable than the optimized reference conformer retrieved from the Cambridge Structural Database. The reference CEs obtained with common dispersion-corrected functionals are employed to test the low-cost semiempirical methods. The superiority of the GFN<i>n</i>-xTB schemes over PM6*/7 methods is confirmed by the basic statistical analysis of the CEs. In addition, the influence of the vibrational thermostatistical (Δ<i>G</i><sub>therm</sub>) and continuum solvation (Δ<i>G</i><sub>solv</sub>) corrections on the CEs is examined in the framework of the (modified) scaled rigid-rotor-harmonic oscillator, (m)sRRHO, approximation, and solvation model based on density (SMD). In general, conformational Gibbs free energies exhibit excellent correlation with the respective electronic energies, especially if a more robust msRRHO scheme is employed for the calculation of Δ<i>G</i><sub>therm</sub> and in the case of a nonpolar solvent. The deviations from the perfect correlation occur if reduced CE windows of &lt;5 kcal mol<sup>–1</sup> are considered, implying a greater influence of these effects on the sorting of the low-energy structures.","PeriodicalId":56,"journal":{"name":"Organometallics","volume":null,"pages":null},"PeriodicalIF":2.5000,"publicationDate":"2024-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Organometallics","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.organomet.4c00246","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, INORGANIC & NUCLEAR","Score":null,"Total":0}
引用次数: 0

Abstract

A database of conformational energies (CEs) of 16 transition metal (TM) complexes relevant to catalysis is automatically created by employing the new conformer generator program Uniconf. The generation procedure starts from an arbitrary high-energy structure and consistently produces conformer(s) similar to or even more energetically favorable than the optimized reference conformer retrieved from the Cambridge Structural Database. The reference CEs obtained with common dispersion-corrected functionals are employed to test the low-cost semiempirical methods. The superiority of the GFNn-xTB schemes over PM6*/7 methods is confirmed by the basic statistical analysis of the CEs. In addition, the influence of the vibrational thermostatistical (ΔGtherm) and continuum solvation (ΔGsolv) corrections on the CEs is examined in the framework of the (modified) scaled rigid-rotor-harmonic oscillator, (m)sRRHO, approximation, and solvation model based on density (SMD). In general, conformational Gibbs free energies exhibit excellent correlation with the respective electronic energies, especially if a more robust msRRHO scheme is employed for the calculation of ΔGtherm and in the case of a nonpolar solvent. The deviations from the perfect correlation occur if reduced CE windows of <5 kcal mol–1 are considered, implying a greater influence of these effects on the sorting of the low-energy structures.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
16TMCONF543:自动生成的催化相关过渡金属配合物构象能数据集
通过使用新的构象生成程序 Uniconf,自动创建了与催化相关的 16 种过渡金属(TM)配合物的构象能(CE)数据库。该生成程序从任意高能结构开始,始终生成与从剑桥结构数据库中检索到的优化参考构象相似甚至更有利的构象。利用普通色散校正函数获得的参考构象,可以测试低成本的半经验方法。CE 的基本统计分析证实了 GFNn-xTB 方案优于 PM6*/7 方法。此外,在(修正的)比例刚性-转子-谐波振荡器(m)sRRHO 近似和基于密度的溶解模型(SMD)的框架内,研究了振动热统计(ΔGtherm)和连续溶解(ΔGsolv)修正对 CE 的影响。一般来说,构象吉布斯自由能与相应的电子能呈现出极佳的相关性,尤其是在采用更稳健的 msRRHO 方案计算 ΔGtherm 时,以及在非极性溶剂的情况下。如果考虑到 <5 kcal mol-1 的缩小 CE 窗口,则会出现与完美相关性的偏差,这意味着这些效应对低能结构排序的影响更大。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Organometallics
Organometallics 化学-无机化学与核化学
CiteScore
5.60
自引率
7.10%
发文量
382
审稿时长
1.7 months
期刊介绍: Organometallics is the flagship journal of organometallic chemistry and records progress in one of the most active fields of science, bridging organic and inorganic chemistry. The journal publishes Articles, Communications, Reviews, and Tutorials (instructional overviews) that depict research on the synthesis, structure, bonding, chemical reactivity, and reaction mechanisms for a variety of applications, including catalyst design and catalytic processes; main-group, transition-metal, and lanthanide and actinide metal chemistry; synthetic aspects of polymer science and materials science; and bioorganometallic chemistry.
期刊最新文献
Issue Editorial Masthead Issue Publication Information Organodigermanium Compounds: Structures and Properties Divalent Organocopper Complexes: Masked Radicals for Effective Electrochemically Driven Atom Transfer Radical Addition Computational Mechanistic Elucidation of C–N Cross-Coupling Reactions via Ligand-Enabled Au(I)/Au(III) Catalysis: Insights into Y-Arylation of Y–H Bonds (Y = N, C, O, S) Under Base-Free Conditions
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1