Strong Selection, but low repeatability: Temperature-specific effects on genomic predictions of adaptation

Alexandre Rego, Julian Baur, Camille Girard-Tercieux, Maria de la Paz Celorio-Mancera, Rike Stelkens, David Berger
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Abstract

Evolution should be more predictable when natural selection is strong and favors the same outcome. Climate warming is increasing temperatures beyond the optima of many ectotherms, which, due to the inherent non-linear relationship between temperature and the rate of cellular processes, is predicted to impose stronger selection compared to corresponding shifts toward cold temperatures. This suggests that adaptation to climate warming should be relatively predictable. Here, we tested this hypothesis from the level of single-nucleotide polymorphisms to life-history traits, by conducting an evolve-and-resequence experiment on three genetic backgrounds of the seed beetle, Callosobruchus maculatus. Indeed, phenotypic evolution was faster and more repeatable at hot, relative to cold, temperature. However, at the genomic level, adaptation to heat was less repeatable than to cold, especially when comparing responses between backgrounds. As a result, genomic predictions of phenotypic (mal)adaptation in populations exposed to hot temperature were highly accurate within, but inaccurate between, genetic backgrounds. These results seem best explained by an increased importance of epistasis during adaptation to heat and imply that the same biophysical mechanisms that increase the repeatability of phenotypic evolution by exerting strong selection at hot temperature, reduce repeatability at the genome level. Thus, predictions of adaptation in key phenotypes from genomic data may become increasingly difficult as climates warm.
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选择性强,但重复性低:特定温度对基因组预测适应性的影响
当自然选择强大并倾向于相同的结果时,进化应该更具可预测性。气候变暖使温度升高,超过了许多外温动物的最适温度,由于温度与细胞过程速率之间固有的非线性关系,与相应的低温变化相比,这种变化会带来更强的选择。这表明,对气候变暖的适应应该是相对可预测的。在这里,我们通过对种子甲虫(Callosobruchus maculatus)的三种遗传背景进行进化和序列实验,从单核苷酸多态性到生命史特征的水平对这一假设进行了检验。事实上,相对于低温,高温下的表型进化更快,重复性更高。然而,在基因组水平上,对高温的适应比对低温的适应可重复性更差,特别是在比较不同背景的反应时。因此,基因组对暴露于高温的种群的表型(不良)适应的预测在遗传背景内非常准确,但在遗传背景之间则不准确。这些结果的最佳解释是,在适应高温的过程中,外显率的重要性增加了。这意味着,在高温条件下通过施加强选择而增加表型进化可重复性的生物物理机制,在基因组水平上降低了可重复性。因此,随着气候变暖,从基因组数据预测关键表型的适应性可能会变得越来越困难。
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