The genome sequence of the Violet Carpenter Bee, Xylocopa violacea (Linnaeus, 1785): a hymenopteran species undergoing range expansion

IF 4.3 3区材料科学 Q1 ENGINEERING, ELECTRICAL & ELECTRONIC ACS Applied Electronic Materials Pub Date : 2024-09-16 DOI:10.1038/s41437-024-00720-2

Will J. Nash, Angela Man, Seanna McTaggart, Kendall Baker, Tom Barker, Leah Catchpole, Alex Durrant, Karim Gharbi, Naomi Irish, Gemy Kaithakottil, Debby Ku, Aaliyah Providence, Felix Shaw, David Swarbreck, Chris Watkins, Ann M. McCartney, Giulio Formenti, Alice Mouton, Noel Vella, Björn M. von Reumont, Adriana Vella, Wilfried Haerty

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Abstract

We present a reference genome assembly from an individual male Violet Carpenter Bee (Xylocopa violacea, Linnaeus 1758). The assembly is 1.02 gigabases in span. 48% of the assembly is scaffolded into 17 pseudo-chromosomal units. The mitochondrial genome has also been assembled and is 21.8 kilobases in length. The genome is highly repetitive, likely representing a highly heterochromatic architecture expected of bees from the genus Xylocopa. We also use an evidence-based methodology to annotate 10,152 high confidence coding genes. This genome was sequenced as part of the pilot project of the European Reference Genome Atlas (ERGA) and represents an important addition to the genomic resources available for Hymenoptera.

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紫木匠蜂（Xylocopa violacea，林尼厄斯，1785 年）的基因组序列：一个正在扩大范围的膜翅目物种

我们展示了一个来自雄性紫木匠蜂（Xylocopa violacea, Linnaeus 1758）个体的参考基因组组装。该基因组的跨度为 1.02 千亿字节。48%的基因组组装为 17 个假染色体单元。线粒体基因组也已组装完成，长度为 21.8 千碱基。该基因组具有高度重复性，可能代表了 Xylocopa 属蜜蜂的高度异染色体结构。我们还使用基于证据的方法注释了 10,152 个高置信度编码基因。该基因组的测序是欧洲参考基因组图谱（ERGA）试点项目的一部分，是对膜翅目昆虫基因组资源的重要补充。

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