Exploring Mitochondrial Autophagy Dysregulation in Osteosarcoma: Its Implications for Prognosis and Targeted Therapy.

IF 1.6 4区 医学 Q4 BIOCHEMICAL RESEARCH METHODS Combinatorial chemistry & high throughput screening Pub Date : 2024-09-18 DOI:10.2174/0113862073314265240828170126
Xiangpan Kong, Dawei He, Quan Wang
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Abstract

Objective: This study aimed to investigate the differential expression of mitophagyrelated genes in osteosarcoma patients with distinct prognostic outcomes and explore potential molecular regulatory mechanisms.

Methods: We analyzed microarray data from metastatic and nonmetastatic osteosarcoma patients using the UCSC dataset. Differential gene screening and intersection of mitophagy-related genes were performed using NetworkAnalyst. Random forest and LASSO regression were employed to screen selected genes and establish a risk prediction model. Functional enrichment analysis, protein- protein interaction (PPI) networks, immunoassays, and in vitro experiments were conducted to validate the findings.

Results: Seven differentially expressed genes were identified, and a robust risk prediction model was developed (AUC=0.886). PPI and functional enrichment analyses provided insights into relevant molecules and regulatory pathways. The immunoassay results revealed differences in the immune environment between the metastatic and nonmetastatic groups. Immunohistochemistry demonstrated significant downregulation of EPHA3 expression in the metastatic group, and in vitro experiments indicated that inhibiting EPHA3 increased the proliferative activity and migration ability of osteosarcoma cells.

Conclusion: Our study suggests that the downregulation of EPHA3 may contribute to mitochondrial autophagy dysfunction, thereby increasing the risk of osteosarcoma metastasis.

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探索骨肉瘤线粒体自噬失调:其对预后和靶向治疗的影响
研究目的本研究旨在调查不同预后结果的骨肉瘤患者中有丝分裂相关基因的差异表达,并探索潜在的分子调控机制:我们利用 UCSC 数据集分析了转移性和非转移性骨肉瘤患者的芯片数据。使用 NetworkAnalyst 对有丝分裂相关基因进行了差异基因筛选和交叉分析。采用随机森林和LASSO回归筛选所选基因并建立风险预测模型。为验证研究结果,还进行了功能富集分析、蛋白质-蛋白质相互作用(PPI)网络、免疫测定和体外实验:结果:确定了七个差异表达基因,并建立了一个稳健的风险预测模型(AUC=0.886)。PPI和功能富集分析提供了对相关分子和调控途径的见解。免疫测定结果显示,转移组和非转移组的免疫环境存在差异。免疫组化显示,转移组的EPHA3表达明显下调,体外实验表明,抑制EPHA3可增加骨肉瘤细胞的增殖活性和迁移能力:我们的研究表明,EPHA3的下调可能会导致线粒体自噬功能障碍,从而增加骨肉瘤转移的风险。
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来源期刊
CiteScore
3.10
自引率
5.60%
发文量
327
审稿时长
7.5 months
期刊介绍: Combinatorial Chemistry & High Throughput Screening (CCHTS) publishes full length original research articles and reviews/mini-reviews dealing with various topics related to chemical biology (High Throughput Screening, Combinatorial Chemistry, Chemoinformatics, Laboratory Automation and Compound management) in advancing drug discovery research. Original research articles and reviews in the following areas are of special interest to the readers of this journal: Target identification and validation Assay design, development, miniaturization and comparison High throughput/high content/in silico screening and associated technologies Label-free detection technologies and applications Stem cell technologies Biomarkers ADMET/PK/PD methodologies and screening Probe discovery and development, hit to lead optimization Combinatorial chemistry (e.g. small molecules, peptide, nucleic acid or phage display libraries) Chemical library design and chemical diversity Chemo/bio-informatics, data mining Compound management Pharmacognosy Natural Products Research (Chemistry, Biology and Pharmacology of Natural Products) Natural Product Analytical Studies Bipharmaceutical studies of Natural products Drug repurposing Data management and statistical analysis Laboratory automation, robotics, microfluidics, signal detection technologies Current & Future Institutional Research Profile Technology transfer, legal and licensing issues Patents.
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