Forecasting the Effects of Platelet-Rich Plasma on Follicle Development Following Premature Ovarian Insufficiency by Network Interaction Analysis.

Q3 Agricultural and Biological Sciences Pakistan Journal of Biological Sciences Pub Date : 2024-07-01 DOI:10.3923/pjbs.2024.384.397
Roza Silvia, Fadilah Fadilah, Ahmad Aulia Jusuf, Mila Maidarti, Linda Erlina, Budi Wiweko
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Abstract

<b>Background and Objective:</b> Platelet-Rich Plasma (PRP) is proposed to have a potential regenerative effect on the ovaries following premature ovarian insufficiency (POI), however, the main impact on the process of follicle development (folliculogenesis) remains unclear. Protein-protein interaction (PPI) or network interaction analysis enables us to predict the targets of PRP's biomolecules using biological data through public databases and platforms. Therefore, this method is more efficient in time and cost than traditional laboratory procedures. The purpose of this study was to predict the targets of PRP's biomolecules on folliculogenesis following POI using PPI analysis and to clarify if those predictive targets integrate into PI3K/Akt signaling pathway which is an important pathway in folliculogenesis. <b>Materials and Methods:</b> Mining data targets of POI, PRP and folliculogenesis was done by GeneCards. Only genes with "protein-coding" category were analyzed further. Network analysis was performed using Cytoscape and STRING. Finally, STRING, Enricher and ShinyGO platforms were conducted to analyze gene ontology, including biological processes, molecular function and cellular components, as well as pathways. <b>Results:</b> Network analysis with Cytoscape and STRING discovered 107 gene hubs for POI, PRP and folliculogenesis. Analysis of KEGG pathway using STRING, Enricher and ShinyGO identified 43 genes integrated into PI3K/Akt signaling pathway. From the KEGG pathway, PI3K and Akt were revealed as two main targets following PRP treatment for POI patients. <b>Conclusion:</b> Biomolecules in PRP may recover ovarian follicle development following POI through the PI3K/Akt signaling pathway.

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通过网络交互分析预测富血小板血浆对卵巢早衰后卵泡发育的影响
<b>背景与目的:</b>富血小板血浆(PRP)被认为对卵巢早衰(POI)后的卵巢具有潜在的再生作用,但其对卵泡发育(卵泡生成)过程的主要影响仍不清楚。蛋白质-蛋白质相互作用(PPI)或网络相互作用分析使我们能够通过公共数据库和平台,利用生物数据预测 PRP 生物大分子的靶标。因此,这种方法在时间和成本上都比传统的实验室程序更有效。本研究的目的是利用PPI分析预测PRP生物大分子在POI之后对毛囊生成的作用靶点,并明确这些预测靶点是否整合到PI3K/Akt信号通路中,而PI3K/Akt信号通路是毛囊生成的重要通路。 <b>材料与方法:</b> 通过GeneCards挖掘POI、PRP和毛囊生成的靶点数据。只有 "蛋白质编码 "类别的基因才会被进一步分析。使用 Cytoscape 和 STRING 进行网络分析。<b>结果:</b> 利用 Cytoscape 和 STRING 进行的网络分析发现了 POI、PRP 和毛囊生成的 107 个基因枢纽。利用 STRING、Enricher 和 ShinyGO 对 KEGG 通路进行分析,发现了 43 个整合到 PI3K/Akt 信号通路中的基因。<b>结论:</b>PRP 中的生物分子可通过 PI3K/Akt 信号通路恢复 POI 患者的卵泡发育。
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来源期刊
Pakistan Journal of Biological Sciences
Pakistan Journal of Biological Sciences Agricultural and Biological Sciences-Agronomy and Crop Science
CiteScore
1.90
自引率
0.00%
发文量
102
期刊介绍: Pakistan Journal of Biological Sciences (PJBS) is an international, peer-reviewed and well indexed scientific journal seeks to promote and disseminate the knowledge of biological sciences by publishing outstanding research in the field. Scope of the journal includes: Cell biology, developmental biology, structural biology, microbiology, entomology, toxicology, molecular biology & genetics, biochemistry, biotechnology, biodiversity, ecology, marine biology, plant biology and bioinformatics.
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