Genome-wide analysis of the potato GRF gene family and their expression profiles in response to hormone and Ralstonia solanacearum infection.

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2024-09-24 DOI:10.1007/s13258-024-01572-0
Changhe Wei, Jinli Yan, Pan Xu, Xia Wu, Yan Yi, Xuemei Yue, Caiyan Chen, Lang Yan, Mengmeng Yin
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Abstract

Background: Potato (Solanum tuberosum L.) is one of the most economically significant crops globally. Nevertheless, potato cultivation is becoming increasingly susceptible to a multitude of diseases, including bacterial wilt, which is caused by Ralstonia solanacearum.

Objective: To identify the GRF gene family in potatoes and to examine their expression profiles in response to hormones and R. solanacearum infection.

Methods: A comprehensive genome-wide analysis was conducted to identify the GRF gene family in the potato genome.

Results: A total of 13 GRF genes were identified from the latest potato genome, including five StGRFs belonging to the ɛ group and eight of the non-ɛ group. The transcriptional responses of the StGRFs to two biotic stress-related phytohormones (SA and MeJA) were defined, as well as the response to infection with R. solanacearum in a bacterial wilt-sensitive cultivar, S. tuberosum 'Qingshu 9'. Many StGRF genes exhibited high induction levels in response to R. solanacearum infection and SA treatment while displaying a marked decline in expression in the presence of MeJA. Furthermore, protein interaction network analysis revealed that the StGRF proteins interact with several candidate target proteins, indicating that GRF proteins are ubiquitous regulators in potatoes. However, the associations between two type III effectors (T3Es) RipAC/RipH2 from R. solanacearum isolates and StGRF7 were not detectable in a yeast two-hybrid assay.

Conclusion: This study provides comprehensive information on the GRF gene family and lays a foundation for further research on the molecular mechanism of potato biotic stress adaptation.

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马铃薯 GRF 基因家族的全基因组分析及其对激素和 Ralstonia solanacearum 感染的表达谱。
背景:马铃薯(Solanum tuberosum L.)是全球最具经济价值的作物之一。然而,马铃薯种植越来越容易受到多种病害的影响,其中包括由 Ralstonia solanacearum 引起的细菌性枯萎病:目的:确定马铃薯中的 GRF 基因家族,并研究它们对激素和 R. solanacearum 感染的表达谱:方法:对马铃薯基因组中的 GRF 基因家族进行了全面的全基因组分析:结果:从最新的马铃薯基因组中共鉴定出13个GRF基因,其中5个StGRF属于ɛ组,8个属于非ɛ组。确定了 StGRFs 对两种生物胁迫相关植物激素(SA 和 MeJA)的转录响应,以及对细菌枯萎病敏感的栽培品种 S. tuberosum 'Qingshu 9' 感染 R. solanacearum 的响应。许多 StGRF 基因在 R. solanacearum 感染和 SA 处理时表现出较高的诱导水平,而在 MeJA 存在时则表现出明显的表达下降。此外,蛋白质相互作用网络分析显示,StGRF 蛋白与多个候选靶蛋白相互作用,表明 GRF 蛋白是马铃薯中无处不在的调控因子。然而,在酵母双杂交试验中,无法检测到来自 R. solanacearum 分离物的两种 III 型效应物(T3Es)RipAC/RipH2 与 StGRF7 之间的关联:本研究提供了有关 GRF 基因家族的全面信息,为进一步研究马铃薯生物胁迫适应的分子机制奠定了基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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