Estimating genetic parameters and trends in growth curve traits of Zandi sheep using the SAEM algorithm.

IF 1.7 3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Tropical animal health and production Pub Date : 2024-09-27 DOI:10.1007/s11250-024-04150-4
Khabat Kheirabadi
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Abstract

The objectives of this study were to evaluate the influence of environmental effects on growth curve traits of Zandi lambs and estimate their genetic parameters with the best-fit animal model. For this purpose, live body weight (BW) records (n = 10,607) of 2,519 individuals (which were progeny of 278 rams and 1,485 ewes) were used to estimate genetic effects on growth curve traits from birth to yearling age of Zandi lambs. Using the Stochastic Approximation Expectation Maximization (SAEM) algorithm the growth curve parameters of five different mixed functions (i.e., Brody, Richards, Von Bertalanffy, Gompertz and Logistic) were obtained, then for the most appropriate model the genetic parameters were estimated using a Bayesian approach fitted multivariate animal model and ignoring or including maternal genetic effect. Except Richards model, all other mixed functions used here closely fitted actual BW records (R2 > 0.96). However, the Logistic function provided the best fit in every type. So, studied growth curve traits were estimated asymptotic weight which considered as mature weight (a), rate parameter (b), rate of maturing (k), and age (Ai)/weight (Wi) at the point of inflection. Of the fixed effects studied (i.e., gender, birth type, dam age, season and year of birth), the only non-significant relationship was the effect dam age on b and Ai. Based on the best-fitted model, posterior means of heritability estimates for a, b, k, Wi and Ai were 0.142 ± 0.036, 0.094 ± 0.029, 0.143 ± 0.063, 0.149 ± 0.039 and 0.029 ± 0.013, respectively. Posterior means of genetic correlations between mentioned traits ranged from -0.018 ± 0.069 (b-k) to 0.959 ± 0.029 (a-b), whereas the phenotypic correlation varied from -0.047 ± 0.014 (b-k) to 0.836 ± 0.007 (a-b). It was concluded that the model including only direct additive effect was sufficient to explain the variation in all investigated growth traits of Zandi lambs, selection for these traits results in slow genetic gain (due to the lack of sufficient genetic variation), but it would not be difficult to improve their mature weight and rate of maturing jointly. The results indicate that although the rate of genetic change for mature weight has been small (0.008 ± 0.003 kg year-1; P < 0.05) but in the favorable direction for this breed.

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利用 SAEM 算法估计赞迪羊生长曲线性状的遗传参数和趋势。
本研究的目的是评估环境对赞迪羔羊生长曲线性状的影响,并利用最佳拟合动物模型估算其遗传参数。为此,研究人员使用了 2,519 只羔羊(278 只公羊和 1,485 只母羊的后代)的活体体重记录(n = 10,607 )来估算赞地羔羊从出生到一岁的生长曲线性状的遗传效应。利用随机逼近期望最大化算法(SAEM)获得了五种不同混合函数(即 Brody、Richards、Von Bertalanffy、Gompertz 和 Logistic)的生长曲线参数,然后采用贝叶斯方法(Bayesian approach)拟合多变量动物模型,忽略或包括母源遗传效应,估算出最合适模型的遗传参数。除理查兹模型外,本文使用的所有其他混合函数都非常贴近实际体重记录(R2 > 0.96)。然而,Logistic 函数在每种类型中的拟合效果都最好。因此,研究的生长曲线性状是估计渐近体重,即成熟体重(a)、速率参数(b)、成熟速率(k)和拐点处的年龄(Ai)/体重(Wi)。在研究的固定效应(即性别、出生类型、坝龄、季节和出生年份)中,唯一不显著的关系是坝龄对 b 和 Ai 的影响。根据最佳拟合模型,a、b、k、Wi 和 Ai 的遗传力估计值的后验均值分别为 0.142 ± 0.036、0.094 ± 0.029、0.143 ± 0.063、0.149 ± 0.039 和 0.029 ± 0.013。上述性状之间遗传相关性的后验均值从-0.018 ± 0.069(b-k)到 0.959 ± 0.029(a-b)不等,而表型相关性则从-0.047 ± 0.014(b-k)到 0.836 ± 0.007(a-b)不等。结论是,仅包括直接加性效应的模型足以解释所有调查的赞迪羔羊生长性状的变化,对这些性状的选择导致遗传增益缓慢(由于缺乏足够的遗传变异),但要共同提高其成熟重和成熟率并不困难。结果表明,虽然成熟体重的遗传变化率很小(0.008 ± 0.003 kg year-1;P
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来源期刊
Tropical animal health and production
Tropical animal health and production 农林科学-兽医学
CiteScore
3.40
自引率
11.80%
发文量
361
审稿时长
6-12 weeks
期刊介绍: Tropical Animal Health and Production is an international journal publishing the results of original research in any field of animal health, welfare, and production with the aim of improving health and productivity of livestock, and better utilisation of animal resources, including wildlife in tropical, subtropical and similar agro-ecological environments.
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