Study on canopy extraction method for narrowband spectral images based on superpixel color gradation skewness distribution features.

IF 4.7 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Plant Methods Pub Date : 2024-10-01 DOI:10.1186/s13007-024-01281-5
Hongfeng Yu, Yongqian Ding, Pei Zhang, Furui Zhang, Xianglin Dou, Zhengmeng Chen
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Abstract

Background: Crop phenotype extraction devices based on multiband narrowband spectral images can effectively detect the physiological and biochemical parameters of crops, which plays a positive role in guiding the development of precision agriculture. Although the narrowband spectral image canopy extraction method is a fundamental algorithm for the development of crop phenotype extraction devices, developing a highly real-time and embedded integrated narrowband spectral image canopy extraction method remains challenging owing to the small difference between the narrowband spectral image canopy and background.

Methods: This study identified and validated the skewed distribution of leaf color gradation in narrowband spectral images. By introducing kurtosis and skewness feature parameters, a canopy extraction method based on a superpixel skewed color gradation distribution was proposed for narrowband spectral images. In addition, different types of parameter combinations were input to construct two classifier models, and the contribution of the skewed distribution feature parameters to the proposed canopy extraction method was evaluated to confirm the effectiveness of introducing skewed leaf color skewed distribution features.

Results: Leaf color gradient skewness verification was conducted on 4200 superpixels of different sizes, and 4190 superpixels conformed to the skewness distribution. The intersection over union (IoU) between the soil background and canopy of the expanded leaf color skewed distribution feature parameters was 90.41%, whereas that of the traditional Otsu segmentation algorithm was 77.95%. The canopy extraction method used in this study performed significantly better than the traditional threshold segmentation method, using the same training set, Y1 (without skewed parameters) and Y2 (with skewed parameters) Bayesian classifier models were constructed. After evaluating the segmentation effect of introducing skewed parameters, the average classification accuracies Acc_Y1 of the Y1 model and Acc_Y2 of the Y2 model were 72.02% and 91.76%, respectively, under the same test conditions. This indicates that introducing leaf color gradient skewed parameters can significantly improve the accuracy of Bayesian classifiers for narrowband spectral images of the canopy and soil background.

Conclusions: The introduction of kurtosis and skewness as leaf color skewness feature parameters can expand the expression of leaf color information in narrowband spectral images. The narrowband spectral image canopy extraction method based on superpixel color skewness distribution features can effectively segment the canopy and soil background in narrowband spectral images, thereby providing a new solution for crop canopy phenotype feature extraction.

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基于超像素色阶偏度分布特征的窄带光谱图像树冠提取方法研究
背景:基于多波段窄带光谱图像的作物表型提取装置可以有效检测作物的生理生化参数,对精准农业的发展具有积极的指导作用。虽然窄带光谱图像冠层提取方法是开发作物表型提取设备的基础算法,但由于窄带光谱图像冠层与背景之间的差异较小,开发一种实时性高、嵌入式集成的窄带光谱图像冠层提取方法仍具有挑战性:方法:本研究发现并验证了窄带光谱图像中叶片色阶的倾斜分布。通过引入峰度和偏度特征参数,针对窄带光谱图像提出了一种基于超像素倾斜色阶分布的树冠提取方法。此外,还输入了不同类型的参数组合来构建两个分类器模型,并评估了倾斜分布特征参数对所提出的树冠提取方法的贡献,以确认引入倾斜叶色倾斜分布特征的有效性:结果:对4200个不同大小的超像素进行了叶色梯度偏度验证,4190个超像素符合偏度分布。扩展叶色倾斜分布特征参数的土壤背景与树冠之间的交集大于联合(IoU)率为 90.41%,而传统的大津分割算法的交集大于联合率为 77.95%。使用相同的训练集,构建了 Y1(无偏斜参数)和 Y2(有偏斜参数)贝叶斯分类器模型,本研究使用的冠层提取方法的性能明显优于传统的阈值分割方法。在评估了引入倾斜参数的分割效果后,在相同的测试条件下,Y1 模型的平均分类精度 Acc_Y1 和 Y2 模型的平均分类精度 Acc_Y2 分别为 72.02% 和 91.76%。这表明,引入叶色梯度偏斜参数可以显著提高贝叶斯分类器对冠层和土壤背景窄带光谱图像的准确性:结论:引入峰度和偏度作为叶色偏度特征参数可以扩展窄带光谱图像中叶色信息的表达。基于超像素颜色偏度分布特征的窄带光谱图像冠层提取方法能有效分割窄带光谱图像中的冠层和土壤背景,从而为作物冠层表型特征提取提供了一种新的解决方案。
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来源期刊
Plant Methods
Plant Methods 生物-植物科学
CiteScore
9.20
自引率
3.90%
发文量
121
审稿时长
2 months
期刊介绍: Plant Methods is an open access, peer-reviewed, online journal for the plant research community that encompasses all aspects of technological innovation in the plant sciences. There is no doubt that we have entered an exciting new era in plant biology. The completion of the Arabidopsis genome sequence, and the rapid progress being made in other plant genomics projects are providing unparalleled opportunities for progress in all areas of plant science. Nevertheless, enormous challenges lie ahead if we are to understand the function of every gene in the genome, and how the individual parts work together to make the whole organism. Achieving these goals will require an unprecedented collaborative effort, combining high-throughput, system-wide technologies with more focused approaches that integrate traditional disciplines such as cell biology, biochemistry and molecular genetics. Technological innovation is probably the most important catalyst for progress in any scientific discipline. Plant Methods’ goal is to stimulate the development and adoption of new and improved techniques and research tools and, where appropriate, to promote consistency of methodologies for better integration of data from different laboratories.
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