{"title":"Study on canopy extraction method for narrowband spectral images based on superpixel color gradation skewness distribution features.","authors":"Hongfeng Yu, Yongqian Ding, Pei Zhang, Furui Zhang, Xianglin Dou, Zhengmeng Chen","doi":"10.1186/s13007-024-01281-5","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Crop phenotype extraction devices based on multiband narrowband spectral images can effectively detect the physiological and biochemical parameters of crops, which plays a positive role in guiding the development of precision agriculture. Although the narrowband spectral image canopy extraction method is a fundamental algorithm for the development of crop phenotype extraction devices, developing a highly real-time and embedded integrated narrowband spectral image canopy extraction method remains challenging owing to the small difference between the narrowband spectral image canopy and background.</p><p><strong>Methods: </strong>This study identified and validated the skewed distribution of leaf color gradation in narrowband spectral images. By introducing kurtosis and skewness feature parameters, a canopy extraction method based on a superpixel skewed color gradation distribution was proposed for narrowband spectral images. In addition, different types of parameter combinations were input to construct two classifier models, and the contribution of the skewed distribution feature parameters to the proposed canopy extraction method was evaluated to confirm the effectiveness of introducing skewed leaf color skewed distribution features.</p><p><strong>Results: </strong>Leaf color gradient skewness verification was conducted on 4200 superpixels of different sizes, and 4190 superpixels conformed to the skewness distribution. The intersection over union (IoU) between the soil background and canopy of the expanded leaf color skewed distribution feature parameters was 90.41%, whereas that of the traditional Otsu segmentation algorithm was 77.95%. The canopy extraction method used in this study performed significantly better than the traditional threshold segmentation method, using the same training set, Y1 (without skewed parameters) and Y2 (with skewed parameters) Bayesian classifier models were constructed. After evaluating the segmentation effect of introducing skewed parameters, the average classification accuracies Acc_Y1 of the Y1 model and Acc_Y2 of the Y2 model were 72.02% and 91.76%, respectively, under the same test conditions. This indicates that introducing leaf color gradient skewed parameters can significantly improve the accuracy of Bayesian classifiers for narrowband spectral images of the canopy and soil background.</p><p><strong>Conclusions: </strong>The introduction of kurtosis and skewness as leaf color skewness feature parameters can expand the expression of leaf color information in narrowband spectral images. The narrowband spectral image canopy extraction method based on superpixel color skewness distribution features can effectively segment the canopy and soil background in narrowband spectral images, thereby providing a new solution for crop canopy phenotype feature extraction.</p>","PeriodicalId":20100,"journal":{"name":"Plant Methods","volume":"20 1","pages":"155"},"PeriodicalIF":4.7000,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11446045/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Plant Methods","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1186/s13007-024-01281-5","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0
Abstract
Background: Crop phenotype extraction devices based on multiband narrowband spectral images can effectively detect the physiological and biochemical parameters of crops, which plays a positive role in guiding the development of precision agriculture. Although the narrowband spectral image canopy extraction method is a fundamental algorithm for the development of crop phenotype extraction devices, developing a highly real-time and embedded integrated narrowband spectral image canopy extraction method remains challenging owing to the small difference between the narrowband spectral image canopy and background.
Methods: This study identified and validated the skewed distribution of leaf color gradation in narrowband spectral images. By introducing kurtosis and skewness feature parameters, a canopy extraction method based on a superpixel skewed color gradation distribution was proposed for narrowband spectral images. In addition, different types of parameter combinations were input to construct two classifier models, and the contribution of the skewed distribution feature parameters to the proposed canopy extraction method was evaluated to confirm the effectiveness of introducing skewed leaf color skewed distribution features.
Results: Leaf color gradient skewness verification was conducted on 4200 superpixels of different sizes, and 4190 superpixels conformed to the skewness distribution. The intersection over union (IoU) between the soil background and canopy of the expanded leaf color skewed distribution feature parameters was 90.41%, whereas that of the traditional Otsu segmentation algorithm was 77.95%. The canopy extraction method used in this study performed significantly better than the traditional threshold segmentation method, using the same training set, Y1 (without skewed parameters) and Y2 (with skewed parameters) Bayesian classifier models were constructed. After evaluating the segmentation effect of introducing skewed parameters, the average classification accuracies Acc_Y1 of the Y1 model and Acc_Y2 of the Y2 model were 72.02% and 91.76%, respectively, under the same test conditions. This indicates that introducing leaf color gradient skewed parameters can significantly improve the accuracy of Bayesian classifiers for narrowband spectral images of the canopy and soil background.
Conclusions: The introduction of kurtosis and skewness as leaf color skewness feature parameters can expand the expression of leaf color information in narrowband spectral images. The narrowband spectral image canopy extraction method based on superpixel color skewness distribution features can effectively segment the canopy and soil background in narrowband spectral images, thereby providing a new solution for crop canopy phenotype feature extraction.
期刊介绍:
Plant Methods is an open access, peer-reviewed, online journal for the plant research community that encompasses all aspects of technological innovation in the plant sciences.
There is no doubt that we have entered an exciting new era in plant biology. The completion of the Arabidopsis genome sequence, and the rapid progress being made in other plant genomics projects are providing unparalleled opportunities for progress in all areas of plant science. Nevertheless, enormous challenges lie ahead if we are to understand the function of every gene in the genome, and how the individual parts work together to make the whole organism. Achieving these goals will require an unprecedented collaborative effort, combining high-throughput, system-wide technologies with more focused approaches that integrate traditional disciplines such as cell biology, biochemistry and molecular genetics.
Technological innovation is probably the most important catalyst for progress in any scientific discipline. Plant Methods’ goal is to stimulate the development and adoption of new and improved techniques and research tools and, where appropriate, to promote consistency of methodologies for better integration of data from different laboratories.