Identification of bHLH transcription factors and screening of anthocyanin-related genes in Lagerstroemia indica.

IF 1.3 4区 生物学 Q4 GENETICS & HEREDITY Genetica Pub Date : 2024-12-01 Epub Date: 2024-10-04 DOI:10.1007/s10709-024-00215-2
Mengxin Yu, Mingzhu Bai, Mengmeng Chen, Guozhe Zhang, Yu Zhao, Qingqing Ma, Liyuan Yang, Cuihua Gu
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Abstract

The basic helix-loop-helix (bHLH) family is one of the three major transcription factor families that play important transcriptional regulatory roles in plant growth and development. One of the most crucial elements in defining Lagerstroemia indica's decorative qualities is flower color. However, the function of the bHLH transcription factor family in L. indica anthocyanin glycoside synthesis has not been clarified. Using the transcriptome data of flower color, 79 LibHLH genes were found in this study. Phylogenetic analysis showed that the LibHLH genes can be divided into 16 subfamilies, and most of the genes in the same subfamily have similar conserved motifs. The total anthocyanin glycoside content of L. indica 'Zihua Guifei' petals was determined during three developmental stages of the petals' growth. The results showed that the total anthocyanin glycoside content grew gradually with growth and development, and that it accumulated most during the full bloom stage. By using gene expression analysis, protein interaction network analysis, and bioinformatics, it was possible to determine which member of the III f family, LibHLH29, is important for the synthesis of anthocyanin glycosides in L. indica. Its expression was confirmed by qRT-PCR, and the results were essentially compatible with the transcriptome data. It was more prominent in the light-colored bloom stage the color-transition stage of L. indica 'Zihua Guifei'. It can be further investigated as a major candidate gene for regulating anthocyanin glycoside synthesis in L. indica, thus laying the foundation for an in-depth study of the interactions among transcription factors.

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鉴定 Lagerstroemia indica 中的 bHLH 转录因子并筛选花青素相关基因。
基本螺旋环-螺旋(bHLH)家族是三大转录因子家族之一,在植物生长和发育过程中发挥着重要的转录调控作用。花色是决定 Lagerstroemia indica 装饰性品质的最关键因素之一。然而,bHLH 转录因子家族在籼稻花青素苷合成中的功能尚未明确。本研究利用花色转录组数据,发现了 79 个 LibHLH 基因。系统进化分析表明,LibHLH 基因可分为 16 个亚科,同一亚科中的大多数基因具有相似的保守基序。在花瓣生长的三个发育阶段,测定了 "紫花贵妃 "花瓣的总花青素苷含量。结果表明,花青苷总含量随着花瓣的生长发育而逐渐增加,在盛花期积累最多。通过基因表达分析、蛋白质相互作用网络分析和生物信息学,可以确定Ⅲ f 家族中的 LibHLH29 对籼稻花色苷的合成具有重要作用。通过 qRT-PCR 对其表达进行了确认,结果与转录组数据基本一致。它在紫花地丁'紫花贵妃'的浅色开花期和转色期更为突出。可以将其作为调控籼稻花青素苷合成的主要候选基因进行进一步研究,从而为深入研究转录因子之间的相互作用奠定基础。
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来源期刊
Genetica
Genetica 生物-遗传学
CiteScore
2.70
自引率
0.00%
发文量
32
审稿时长
>12 weeks
期刊介绍: Genetica publishes papers dealing with genetics, genomics, and evolution. Our journal covers novel advances in the fields of genomics, conservation genetics, genotype-phenotype interactions, evo-devo, population and quantitative genetics, and biodiversity. Genetica publishes original research articles addressing novel conceptual, experimental, and theoretical issues in these areas, whatever the taxon considered. Biomedical papers and papers on breeding animal and plant genetics are not within the scope of Genetica, unless framed in an evolutionary context. Recent advances in genetics, genomics and evolution are also published in thematic issues and synthesis papers published by experts in the field.
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