Integrated bioinformatics reveals genetic links between visceral obesity and uterine tumors.

IF 2.3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Molecular Genetics and Genomics Pub Date : 2024-10-05 DOI:10.1007/s00438-024-02184-9
Swayamprabha Samantaray, Nidhi Joshi, Shrinal Vasa, Shan Shibu, Aditi Kaloni, Bhavin Parekh, Anupama Modi
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Abstract

Visceral obesity (VO), characterized by excess fat around internal organs, is a recognized risk factor for gynecological tumors, including benign uterine leiomyoma (ULM) and malignant uterine leiomyosarcoma (ULS). Despite this association, the shared molecular mechanisms remain underexplored. This study utilizes an integrated bioinformatics approach to elucidate common molecular pathways and identify potential therapeutic targets linking VO, ULM, and ULS. We analyzed gene expression datasets from the Gene Expression Omnibus (GEO) to identify differentially expressed genes (DEGs) in each condition. We found 101, 145, and 18 DEGs in VO, ULM, and ULS, respectively, with 37 genes overlapping across all three conditions. Functional enrichment analysis revealed that these overlapping DEGs were significantly enriched in pathways related to cell proliferation, immune response, and transcriptional regulation, suggesting shared biological processes. Protein-protein interaction network analysis identified 14 hub genes, of which TOP2A, APOE, and TYMS showed significant differential expression across all three conditions. Drug-gene interaction analysis identified 26 FDA-approved drugs targeting these hub genes, highlighting potential therapeutic opportunities. In conclusion, this study uncovers shared molecular pathways and actionable drug targets across VO, ULM, and ULS. These findings deepen our understanding of disease etiology and offer promising avenues for drug repurposing. Experimental validation is needed to translate these insights into clinical applications and innovative treatments.

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综合生物信息学揭示了内脏肥胖与子宫肿瘤之间的遗传联系。
以内脏器官周围脂肪过多为特征的内脏肥胖(VO)是妇科肿瘤(包括良性子宫肌瘤(ULM)和恶性子宫肌瘤(ULS))的公认风险因素。尽管存在这种关联,但共同的分子机制仍未得到充分探索。本研究利用综合生物信息学方法阐明了共同的分子通路,并确定了连接 VO、ULM 和 ULS 的潜在治疗靶点。我们分析了基因表达总库(GEO)中的基因表达数据集,以确定每种情况下的差异表达基因(DEGs)。我们在 VO、ULM 和 ULS 中分别发现了 101、145 和 18 个 DEGs,其中有 37 个基因在所有三种情况下重叠。功能富集分析表明,这些重叠的 DEGs 在与细胞增殖、免疫反应和转录调控相关的通路中显著富集,表明存在共同的生物学过程。蛋白质-蛋白质相互作用网络分析发现了 14 个枢纽基因,其中 TOP2A、APOE 和 TYMS 在所有三种情况下都有显著的差异表达。药物-基因相互作用分析确定了 26 种针对这些中心基因的 FDA 批准药物,突显了潜在的治疗机会。总之,这项研究发现了 VO、ULM 和 ULS 的共同分子通路和可操作的药物靶点。这些发现加深了我们对疾病病因学的理解,并为药物的再利用提供了很好的途径。要将这些见解转化为临床应用和创新治疗方法,还需要进行实验验证。
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来源期刊
Molecular Genetics and Genomics
Molecular Genetics and Genomics 生物-生化与分子生物学
CiteScore
5.10
自引率
3.20%
发文量
134
审稿时长
1 months
期刊介绍: Molecular Genetics and Genomics (MGG) publishes peer-reviewed articles covering all areas of genetics and genomics. Any approach to the study of genes and genomes is considered, be it experimental, theoretical or synthetic. MGG publishes research on all organisms that is of broad interest to those working in the fields of genetics, genomics, biology, medicine and biotechnology. The journal investigates a broad range of topics, including these from recent issues: mechanisms for extending longevity in a variety of organisms; screening of yeast metal homeostasis genes involved in mitochondrial functions; molecular mapping of cultivar-specific avirulence genes in the rice blast fungus and more.
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