Native Digestion and Shotgun Proteomics for Host Cell Protein Profiling of Adeno-Associated Viruses

IF 6.7 1区 化学 Q1 CHEMISTRY, ANALYTICAL Analytical Chemistry Pub Date : 2024-10-08 DOI:10.1021/acs.analchem.4c00893
Jean M. Lodge, Lihua Huang, Zhirui Lian, Jun Qian, Yuwei Tian
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Abstract

Host cell proteins (HCPs) are contaminants of biotherapeutics produced from engineered living systems; they can influence the product’s quality, efficacy, and toxicity. Liquid chromatography coupled to mass spectrometry can detect HCPs thereby mitigating their risks. However, highly abundant biotherapeutics hamper the detection of low-level HCPs. Sample preparation termed native digestion has proven effective to preferentially digest and draw out HCPs from intact antibodies. Here, we adapted native digestion to adeno-associated viruses (AAV), which is a vector gaining popularity for gene therapy. We leveraged quantitative proteomics using capillary-flow liquid chromatography-mass spectrometry (LC-MS) and demonstrated that native digestion was more effective than applying denaturing conditions to extract the HCPs associated with different AAV serotypes.

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原生消化和射枪蛋白质组学用于腺相关病毒宿主细胞蛋白质谱分析
宿主细胞蛋白(HCPs)是由工程化活体系统生产的生物治疗药物的污染物;它们会影响产品的质量、疗效和毒性。液相色谱法与质谱联用可以检测 HCP,从而降低其风险。然而,高含量的生物治疗药物阻碍了对低含量 HCP 的检测。被称为原生消化的样品制备方法已被证明能有效地从完整的抗体中优先消化并提取出 HCPs。在这里,我们将原生消化技术应用于腺病毒(AAV),这是一种在基因治疗中越来越受欢迎的载体。我们利用毛细管流液相色谱-质谱联用技术(LC-MS)进行了定量蛋白质组学研究,结果表明原位消化比应用变性条件提取与不同 AAV 血清型相关的 HCPs 更有效。
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来源期刊
Analytical Chemistry
Analytical Chemistry 化学-分析化学
CiteScore
12.10
自引率
12.20%
发文量
1949
审稿时长
1.4 months
期刊介绍: Analytical Chemistry, a peer-reviewed research journal, focuses on disseminating new and original knowledge across all branches of analytical chemistry. Fundamental articles may explore general principles of chemical measurement science and need not directly address existing or potential analytical methodology. They can be entirely theoretical or report experimental results. Contributions may cover various phases of analytical operations, including sampling, bioanalysis, electrochemistry, mass spectrometry, microscale and nanoscale systems, environmental analysis, separations, spectroscopy, chemical reactions and selectivity, instrumentation, imaging, surface analysis, and data processing. Papers discussing known analytical methods should present a significant, original application of the method, a notable improvement, or results on an important analyte.
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