In Silico Investigation of Molecular Properties and Molecular Docking of Darunavir: An Anti-HIV Drug

Q3 Materials Science Macromolecular Symposia Pub Date : 2024-10-17 DOI:10.1002/masy.202400052
Shiv Kumar, Gargi Tiwari, Dipendra Sharma
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Abstract

A second-generation HIV protease enzyme inhibitor, darunavir is used in combination therapy for patients with history of prior antiretroviral treatments. It inhibits the cleavage of HIV encoded gag-pol polyprotein in cells contaminated by a virus and thereby hinders the development of mature and infectious new virions. In this paper, optimization of molecular geometry of darunavir has been obtained by Density Functional Theory based B3LYP and ωB97XD methods with 6–311+G(d,p) basis set. The electro-optical, global reactivity descriptors, and UV–visible spectrum of the drug have been examined using both the functionals. Further, binding affinity of darunavir at different sites of protein receptor (PDB ID: 5b18) has been analyzed using molecular docking technique. Results have been used to discuss electro-optical and electronic properties of the drug along with its binding affinities with protein receptors.

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达芦那韦分子特性和分子对接的硅学研究:抗艾滋病毒药物
达芦那韦是第二代艾滋病病毒蛋白酶抑制剂,用于既往接受过抗逆转录病毒治疗的患者的联合治疗。它能抑制被病毒污染的细胞中 HIV 编码的 gag-pol 多聚蛋白的裂解,从而阻碍成熟的、具有传染性的新病毒的发育。本文采用基于密度泛函理论的 B3LYP 和 ωB97XD 方法以及 6-311+G(d,p) 基集对达鲁那韦的分子几何形状进行了优化。使用这两种函数对药物的电光、全局反应性描述符和紫外-可见光谱进行了研究。此外,还使用分子对接技术分析了达鲁那韦与蛋白质受体(PDB ID:5b18)不同位点的结合亲和力。研究结果用于讨论该药物的电光和电子特性及其与蛋白质受体的结合亲和力。
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来源期刊
Macromolecular Symposia
Macromolecular Symposia Materials Science-Polymers and Plastics
CiteScore
1.50
自引率
0.00%
发文量
226
期刊介绍: Macromolecular Symposia presents state-of-the-art research articles in the field of macromolecular chemistry and physics. All submitted contributions are peer-reviewed to ensure a high quality of published manuscripts. Accepted articles will be typeset and published as a hardcover edition together with online publication at Wiley InterScience, thereby guaranteeing an immediate international dissemination.
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