Encodable DNA Hairpin Probes for Nanopore Multiplexed Target Detection

IF 6.7 1区 化学 Q1 CHEMISTRY, ANALYTICAL Analytical Chemistry Pub Date : 2024-10-21 DOI:10.1021/acs.analchem.4c03469
Feifei Sun, Jinde Liu, Zhuoqun Su, Di Wu, Shaoqi Qu, Yongning Wu, Lin Li, Guoliang Li
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Abstract

Owing to the co-occurrence of hazardous compounds, it is crucial to build multiple highly discriminative probe libraries for simultaneous determination. Drawing inspiration from nucleic acid barcodes, we developed a probe system that is exclusively based on the nucleic acid secondary structure’s hairpin structure, which can be directly read by nanopores. The highly distinguishable hairpin probes were constructed, and a detailed explanation of the possible patterns in their design was provided. These probe-representative events measured through the α-hemolysin (α-HL) nanopores were both distinguished, either through visual observation or comparison of the nanopore parameters. Besides, the potential design pattern for probes with unique telegraphic switching between the two levels was also unveiled. Finally, these probes were utilized to realize simultaneous, ultrasensitive mycotoxin multiple-detection, and their prospective applications for the detection of proteins and microRNAs were presented, indicating their suitability for a wide range of sensing applications.

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用于纳米孔多重目标检测的可编码 DNA 发夹探针
由于有害化合物同时存在,因此建立多个高分辨探针库以同时进行测定至关重要。我们从核酸条形码中汲取灵感,开发了一种完全基于核酸二级结构发夹结构的探针系统,这种结构可以被纳米孔直接读取。我们构建了可高度区分的发夹探针,并详细解释了其设计中可能存在的模式。这些通过α-溶血素(α-HL)纳米孔测量到的探针代表事件都可以通过肉眼观察或比较纳米孔参数加以区分。此外,还揭示了在两个层次之间具有独特电报切换功能的探针的潜在设计模式。最后,利用这些探针实现了同步、超灵敏的霉菌毒素多重检测,并介绍了它们在蛋白质和微RNA检测方面的应用前景,表明它们适用于广泛的传感应用。
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来源期刊
Analytical Chemistry
Analytical Chemistry 化学-分析化学
CiteScore
12.10
自引率
12.20%
发文量
1949
审稿时长
1.4 months
期刊介绍: Analytical Chemistry, a peer-reviewed research journal, focuses on disseminating new and original knowledge across all branches of analytical chemistry. Fundamental articles may explore general principles of chemical measurement science and need not directly address existing or potential analytical methodology. They can be entirely theoretical or report experimental results. Contributions may cover various phases of analytical operations, including sampling, bioanalysis, electrochemistry, mass spectrometry, microscale and nanoscale systems, environmental analysis, separations, spectroscopy, chemical reactions and selectivity, instrumentation, imaging, surface analysis, and data processing. Papers discussing known analytical methods should present a significant, original application of the method, a notable improvement, or results on an important analyte.
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