Designing a novel multi-epitope antigen for diagnosing human cytomegalovirus infection: An immunoinformatics approach

IF 2.7 4区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Biotechnology and applied biochemistry Pub Date : 2024-10-17 DOI:10.1002/bab.2677
Marzieh Asadi, Younes Ghasemi, Navid Nezafat, Bahador Sarkari, Maryam Baneshi, Zohreh Mostafavi-Pour, Mohammad Hossein Anbardar, Amir Savardashtaki
{"title":"Designing a novel multi-epitope antigen for diagnosing human cytomegalovirus infection: An immunoinformatics approach","authors":"Marzieh Asadi,&nbsp;Younes Ghasemi,&nbsp;Navid Nezafat,&nbsp;Bahador Sarkari,&nbsp;Maryam Baneshi,&nbsp;Zohreh Mostafavi-Pour,&nbsp;Mohammad Hossein Anbardar,&nbsp;Amir Savardashtaki","doi":"10.1002/bab.2677","DOIUrl":null,"url":null,"abstract":"<p>Human cytomegalovirus (HCMV) infection can lead to congenital infections and severe complications, particularly in immunocompromised individuals. Current serological tests for diagnosing HCMV infection often face limitations in sensitivity and specificity. Developing multi-epitope antigens for serological assays offers the potential for enhancing diagnostic accuracy. This study aimed to design a novel multi-epitope antigen for HCMV infection diagnosis using immunoinformatic approaches. Five tegument proteins (universal protein resource [UniProt] ID: Po8318, Po6725, F5HC97, Q6RX10, and F5HC05) were selected based on their antigenic properties and literature review. Six linear B-cell epitopes were predicted within conserved regions of each antigen sequence and linked with appropriate linkers. The designed multi-epitope antigen underwent thorough evaluation for physicochemical properties, solubility, antigenicity, and cross-reactivity. Additionally, the three-dimensional structure of the antigen was predicted, refined, and validated. The nucleotide sequence of the designed antigen was optimized for successful expression in <i>Escherichia coli</i> and inserted into a pET23a (+) vector. Immunoinformatic analysis revealed that the multi-epitope antigen exhibits stability, antigenicity, and lacks cross-reactivity. Our findings suggest that this multi-epitope antigen is a promising candidate for diagnosing HCMV infection. However, further validation through laboratory testing is required to confirm its diagnostic efficacy.</p>","PeriodicalId":9274,"journal":{"name":"Biotechnology and applied biochemistry","volume":"72 2","pages":"469-483"},"PeriodicalIF":2.7000,"publicationDate":"2024-10-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biotechnology and applied biochemistry","FirstCategoryId":"5","ListUrlMain":"https://iubmb.onlinelibrary.wiley.com/doi/10.1002/bab.2677","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Human cytomegalovirus (HCMV) infection can lead to congenital infections and severe complications, particularly in immunocompromised individuals. Current serological tests for diagnosing HCMV infection often face limitations in sensitivity and specificity. Developing multi-epitope antigens for serological assays offers the potential for enhancing diagnostic accuracy. This study aimed to design a novel multi-epitope antigen for HCMV infection diagnosis using immunoinformatic approaches. Five tegument proteins (universal protein resource [UniProt] ID: Po8318, Po6725, F5HC97, Q6RX10, and F5HC05) were selected based on their antigenic properties and literature review. Six linear B-cell epitopes were predicted within conserved regions of each antigen sequence and linked with appropriate linkers. The designed multi-epitope antigen underwent thorough evaluation for physicochemical properties, solubility, antigenicity, and cross-reactivity. Additionally, the three-dimensional structure of the antigen was predicted, refined, and validated. The nucleotide sequence of the designed antigen was optimized for successful expression in Escherichia coli and inserted into a pET23a (+) vector. Immunoinformatic analysis revealed that the multi-epitope antigen exhibits stability, antigenicity, and lacks cross-reactivity. Our findings suggest that this multi-epitope antigen is a promising candidate for diagnosing HCMV infection. However, further validation through laboratory testing is required to confirm its diagnostic efficacy.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
设计用于诊断人类巨细胞病毒感染的新型多表位抗原:免疫信息学方法
人类巨细胞病毒(HCMV)感染可导致先天性感染和严重并发症,尤其是在免疫力低下的人群中。目前用于诊断 HCMV 感染的血清学检测往往在灵敏度和特异性方面存在局限性。开发用于血清学检测的多表位抗原有可能提高诊断的准确性。本研究旨在利用免疫形式化方法设计一种新型多表位抗原,用于诊断 HCMV 感染。五种外壳蛋白(通用蛋白资源 [UniProt] ID:Po8318、Po6725、F5HC97、Q6RX10 和 F5HC05)。在每个抗原序列的保守区域内预测了六个线性 B 细胞表位,并用适当的连接体将其连接起来。对设计的多表位抗原的理化性质、溶解性、抗原性和交叉反应性进行了全面评估。此外,还对抗原的三维结构进行了预测、改进和验证。为了在大肠杆菌中成功表达,对设计抗原的核苷酸序列进行了优化,并将其插入 pET23a (+) 载体。免疫形式分析表明,多表位抗原具有稳定性和抗原性,并且缺乏交叉反应。我们的研究结果表明,这种多表位抗原有望成为诊断 HCMV 感染的候选抗原。不过,还需要通过实验室测试进一步验证其诊断效果。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Biotechnology and applied biochemistry
Biotechnology and applied biochemistry 工程技术-生化与分子生物学
CiteScore
6.00
自引率
7.10%
发文量
117
审稿时长
3 months
期刊介绍: Published since 1979, Biotechnology and Applied Biochemistry is dedicated to the rapid publication of high quality, significant research at the interface between life sciences and their technological exploitation. The Editors will consider papers for publication based on their novelty and impact as well as their contribution to the advancement of medical biotechnology and industrial biotechnology, covering cutting-edge research in synthetic biology, systems biology, metabolic engineering, bioengineering, biomaterials, biosensing, and nano-biotechnology.
期刊最新文献
Unraveling the Time-Dependent Effects of Ethanol on Liver Disease: Insights From a Mice Model. Policy Intervention Towards Ecological Balance Through Reduction of Carbon Footprint in India. Investigating a Medicinally Important Novel Species of Termitomyces From the Lateritic Region of West Bengal. Investigation of the Medical Image Modalities to Detect the Abnormalities in the Spinal Cord Using Thresholding Techniques. In Vitro Evaluation of Acetaminophen as a Repurposed Anti-Influenza Virus Agent.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1