mRNA expression profiles in muscle-derived extracellular vesicles of Large White and wild boar piglets reveal their potential roles in immunity and muscle phenotype.

IF 2.6 2区 农林科学 Q1 VETERINARY SCIENCES Frontiers in Veterinary Science Pub Date : 2024-10-03 eCollection Date: 2024-01-01 DOI:10.3389/fvets.2024.1452704
Naixiang Yu, Xiaolong Chang, Jianchao Hu, Jianjun Li, Junwu Ma, Lusheng Huang
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Abstract

Introduction: Extracellular vesicles (EVs) known for their pivotal role in intercellular communication through RNA delivery, hold paramount implications for understanding muscle phenotypic variations in diverse pig breeds.

Methods: In this study, we compared the mRNA expression profiles of longissimus dorsi muscles and muscle-derived extracellular vesicles (M-EVs), and also examined the diversity of enriched genes in M-EVs between weaned wild boars and commercial Large White pigs with respect to their numbers and biological functions.

Results: The results of the study showed that the variation in the expression profiles of mRNAs between muscles and M-EVs was much greater than the variability between the respective breeds. Meanwhile, the enrichment trend of low-expressed genes (ranked <1,000) was significantly (p-value ≤ 0.05) powerful in M-EVs compared to highly expressed genes in muscles. In addition, M-EVs carried a smaller proportion of coding sequences and a larger proportion of untranslated region sequences compared to muscles. There were 2,110 genes enriched in M-EVs (MEGs) in Large White pigs and 2,322 MEGs in wild boars, with 1,490 MEGs shared interbreeds including cyclin D2 (CCND2), which inhibits myogenic differentiation. Of the 89 KEGG pathways that were significantly enriched (p-value ≤ 0.05) for these MEGs, 13 unique to Large White pigs were mainly related to immunity, 27 unique to wild boars were functionally diverse but included cell fate regulation such as the Notch signaling pathway and the TGF-beta signaling pathway, and 49 were common to both breeds were also functionally complex but partially related to innate immunity, such as the Complement and coagulation cascades and the Fc gamma R-mediated phagocytosis.

Discussion: These findings suggest that mRNAs in M-EVs have the potential to serve as indicators of muscle phenotype differences between the two pig breeds, highlighting the need for further exploration into the role of EV-RNAs in pig phenotype formation.

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大白猪和野猪仔猪肌肉源性细胞外囊泡中的 mRNA 表达谱揭示了它们在免疫和肌肉表型中的潜在作用。
引言:细胞外囊泡(EVs)通过传递 RNA 在细胞间通信中发挥关键作用,对于了解不同猪种的肌肉表型差异具有重要意义:在这项研究中,我们比较了背阔肌和肌肉源性细胞外囊泡(M-EVs)的 mRNA 表达谱,还考察了断奶野猪和商品大白猪之间 M-EVs 中富集基因在数量和生物学功能方面的多样性:研究结果表明,肌肉和 M-EV 之间 mRNA 表达谱的差异远大于各自品种之间的差异。同时,与肌肉中的高表达基因相比,M-EV中低表达基因(p值≤0.05)的富集趋势更强。此外,与肌肉相比,M-EV携带的编码序列比例较小,而非翻译区序列比例较大。大白猪的 M-EVs 中富集了 2,110 个基因(MEGs),野猪的 M-EVs 中富集了 2,322 个基因(MEGs),其中 1,490 个基因(MEGs)是杂交猪共有的,包括抑制肌原分化的细胞周期蛋白 D2(CCND2)。在这些MEGs显著富集(p值≤0.05)的89个KEGG通路中,13个大白猪特有的通路主要与免疫有关,27个野猪特有的通路功能多样,但包括细胞命运调控,如Notch信号通路和TGF-beta信号通路,49个两个品种共有的通路功能复杂,但部分与先天免疫有关,如补体和凝血级联以及Fc gamma R介导的吞噬作用:这些研究结果表明,M-EV 中的 mRNAs 有可能成为两个猪种之间肌肉表型差异的指标,突出了进一步探索 EV-RNAs 在猪表型形成中的作用的必要性。
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来源期刊
Frontiers in Veterinary Science
Frontiers in Veterinary Science Veterinary-General Veterinary
CiteScore
4.80
自引率
9.40%
发文量
1870
审稿时长
14 weeks
期刊介绍: Frontiers in Veterinary Science is a global, peer-reviewed, Open Access journal that bridges animal and human health, brings a comparative approach to medical and surgical challenges, and advances innovative biotechnology and therapy. Veterinary research today is interdisciplinary, collaborative, and socially relevant, transforming how we understand and investigate animal health and disease. Fundamental research in emerging infectious diseases, predictive genomics, stem cell therapy, and translational modelling is grounded within the integrative social context of public and environmental health, wildlife conservation, novel biomarkers, societal well-being, and cutting-edge clinical practice and specialization. Frontiers in Veterinary Science brings a 21st-century approach—networked, collaborative, and Open Access—to communicate this progress and innovation to both the specialist and to the wider audience of readers in the field. Frontiers in Veterinary Science publishes articles on outstanding discoveries across a wide spectrum of translational, foundational, and clinical research. The journal''s mission is to bring all relevant veterinary sciences together on a single platform with the goal of improving animal and human health.
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