{"title":"Protocol for constructing whole-genome libraries from mini-biopsies by using laser capture microdissection.","authors":"Yiyi Xi, Shaosen Zhang","doi":"10.1016/j.xpro.2024.103396","DOIUrl":null,"url":null,"abstract":"<p><p>Disclosure of the key events in tumor progress will help us deepen the understanding of tumorigenesis. Here, we present a protocol for multi-regional tissue capture of malignant continuum. We describe steps for preparing tissue sections, laser capture microdissection, and whole-genome library preparation, which enable the concurrent analysis of potential driver events in precancer initiation. This protocol overcomes challenges posed by limited DNA quantity and preserves the spatial information of the target regions. For complete details on the use and execution of this protocol, please refer to Li et al.,<sup>1</sup> Chang et al.,<sup>2</sup> and Chen et al.<sup>3</sup>.</p>","PeriodicalId":34214,"journal":{"name":"STAR Protocols","volume":"5 4","pages":"103396"},"PeriodicalIF":1.3000,"publicationDate":"2024-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11525219/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"STAR Protocols","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1016/j.xpro.2024.103396","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/10/15 0:00:00","PubModel":"Epub","JCR":"Q4","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0
Abstract
Disclosure of the key events in tumor progress will help us deepen the understanding of tumorigenesis. Here, we present a protocol for multi-regional tissue capture of malignant continuum. We describe steps for preparing tissue sections, laser capture microdissection, and whole-genome library preparation, which enable the concurrent analysis of potential driver events in precancer initiation. This protocol overcomes challenges posed by limited DNA quantity and preserves the spatial information of the target regions. For complete details on the use and execution of this protocol, please refer to Li et al.,1 Chang et al.,2 and Chen et al.3.
揭示肿瘤发展过程中的关键事件将有助于我们加深对肿瘤发生的理解。在此,我们介绍一种多区域恶性肿瘤连续组织捕获方案。我们描述了制备组织切片、激光捕获显微切割和全基因组文库制备的步骤,这些步骤可以同时分析癌前病变启动过程中的潜在驱动事件。该方案克服了 DNA 数量有限所带来的挑战,并保留了目标区域的空间信息。有关该方案使用和执行的完整细节,请参阅 Li 等1、Chang 等2 和 Chen 等3。