Synthesis, XRD structural analysis and theoretical studies of a potential inhibitor against rheumatoid arthritis (RA).

IF 0.7 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Acta Crystallographica Section C Structural Chemistry Pub Date : 2024-11-01 Epub Date: 2024-10-24 DOI:10.1107/S2053229624010106
Kevin Monge-Hoyos, Rodolfo Moreno-Fuquen, Kevin Arango-Daraviña, Javier Ellena, Pedro H O Santiago
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引用次数: 0

Abstract

This work focused on analyzing the properties of N-(5-nitrothiazol-2-yl)furan-2-carboxamide (C8H5N3O4S, NTFC) as a possible inhibitor of the rheumatoid arthritis process. The synthesis of NTFC was carried out and good-quality crystals were obtained and studied by NMR (1H and 13C), DEPT 135, UV-Vis, IR, MS and single-crystal X-ray diffraction. The structure of NTFC consists of two rings, thiazole and furan, and a central C-N-C(=O)-C segment, which appears to be planar. This central amide segment forms angles of 2.61 (10) and 7.97 (11)° with the planes of the thiazole and furan rings, respectively. The crystal structure of NTFC exhibits N-H...N, N-H...O and C-H...O hydrogen bonds, and C-H...π and π-π interactions that facilitate self-assembly and the formation of hydrogen-bonded dimers, which implies the appearance of R22(8) graph-set motifs in this interaction. The stability of the dimeric unit is complemented by the formation of strong intramolecular C-S...O interactions of chalcogen character, with an S...O distance of 2.6040 (18) Å. Hirshfeld surface (HS) analysis revealed that O...H/H...O interactions were dominant, accounting for 36.8% of the total HS, and that N-H...N interactions were fundamental to the formation of the dimeric structure. The molecular electrostatic potential (MEP) map showed a maximum energy of 46.73 kcal mol-1 and a minimum of -36.06 kcal mol-1. The interaction energies of molecular pairs around NTFC are highest for those interactions linked by N-H hydrogen bonds. The properties of the NTFC ligand as a potential inhibitor of the DHODH (dihydroorotate dehydrogenase) enzyme were evaluated by molecular docking, showing coupling energies very close to those obtained with the control drug for rheumatoid arthritis, i.e. leflunomide.

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一种潜在的类风湿性关节炎(RA)抑制剂的合成、XRD 结构分析和理论研究。
这项研究的重点是分析 N-(5-硝基噻唑-2-基)呋喃-2-甲酰胺(C8H5N3O4S,NTFC)作为类风湿性关节炎可能的抑制剂的特性。通过核磁共振(1H 和 13C)、DEPT 135、紫外可见光谱、红外光谱、质谱和单晶 X 射线衍射等方法对 NTFC 进行了研究。NTFC 的结构由两个环(噻唑环和呋喃环)和一个看似平面的 C-N-C(=O)-C 中心段组成。该中心酰胺段分别与噻唑环和呋喃环的平面形成 2.61 (10) 和 7.97 (11) ° 的夹角。NTFC 的晶体结构显示出 N-H...N、N-H...O 和 C-H...O 氢键以及 C-H...π 和 π-π 相互作用,这些作用促进了自组装和氢键二聚体的形成,这意味着在这种相互作用中出现了 R22(8) 图集图案。二聚体单元的稳定性还得益于分子内形成的具有缩醛特性的强 C-S...O 相互作用,S...O 间距为 2.6040 (18) Å。Hirshfeld 表面(HS)分析表明,O...H/H...O 相互作用占主导地位,占总 HS 的 36.8%,N-H...N 相互作用是形成二聚结构的基础。分子静电位(MEP)图显示最大能量为 46.73 kcal mol-1,最小为 -36.06 kcal mol-1。通过 N-H 氢键连接的分子对在 NTFC 周围的相互作用能量最高。分子对接评估了 NTFC 配体作为 DHODH(二氢烟酸脱氢酶)潜在抑制剂的特性,结果显示其耦合能与类风湿性关节炎对照药物(来氟米特)非常接近。
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来源期刊
Acta Crystallographica Section C Structural Chemistry
Acta Crystallographica Section C Structural Chemistry CHEMISTRY, MULTIDISCIPLINARYCRYSTALLOGRAPH-CRYSTALLOGRAPHY
CiteScore
1.60
自引率
12.50%
发文量
148
期刊介绍: Acta Crystallographica Section C: Structural Chemistry is continuing its transition to a journal that publishes exciting science with structural content, in particular, important results relating to the chemical sciences. Section C is the journal of choice for the rapid publication of articles that highlight interesting research facilitated by the determination, calculation or analysis of structures of any type, other than macromolecular structures. Articles that emphasize the science and the outcomes that were enabled by the study are particularly welcomed. Authors are encouraged to include mainstream science in their papers, thereby producing manuscripts that are substantial scientific well-rounded contributions that appeal to a broad community of readers and increase the profile of the authors.
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