The burst of satellite DNA in Leptidea wood white butterflies and their putative role in karyotype evolution.

IF 3.9 2区 生物学 Q1 GENETICS & HEREDITY DNA Research Pub Date : 2024-12-01 DOI:10.1093/dnares/dsae030
Diogo Cavalcanti Cabral-de-Mello, Atsuo Yoshido, Diogo Milani, Jindra Šíchová, Ken Sahara, František Marec
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Abstract

Satellite DNAs (satDNAs) are abundant components of eukaryotic genomes, playing pivotal roles in chromosomal organization, genome stability, and evolution. Here, we combined cytogenetic and genomic methods to characterize the satDNAs in the genomes of Leptidea butterflies. Leptidea is characterized by the presence of a high heterochromatin content, large genomes, and extensive chromosomal reshuffling as well as the occurrence of cryptic species. We show that, in contrast to other Lepidoptera, satDNAs constitute a considerable proportion of Leptidea genomes, ranging between 4.11% and 11.05%. This amplification of satDNAs, together with the hyperactivity of transposable elements, contributes to the substantial genome expansion in Leptidea. Using chromosomal mapping, we show that, particularly LepSat01-100 and LepSat03-167 satDNAs, are preferentially localized in heterochromatin exhibiting variable distribution that may have contributed to the highly diverse karyotypes within the genus. The satDNAs also exhibit W-chromosome accumulation, suggesting their involvement in sex chromosome evolution. Our results provide insights into the dynamics of satDNAs in Lepidoptera genomes and highlight their role in genome expansion and chromosomal organization, which could influence the speciation process. The high proportion of repetitive DNAs in the genomes of Leptidea underscores the complex evolutionary dynamics revealing the interplay between repetitive DNAs and genomic architecture in the genus.

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Leptidea 木白蝴蝶中卫星 DNA 的迸发及其在核型进化中的潜在作用。
卫星 DNA(satDNA)是真核生物基因组中的丰富成分,在染色体组织、基因组稳定性和进化中发挥着关键作用。在这里,我们结合细胞遗传学和基因组学方法,对Leptidea蝴蝶基因组中的卫星DNA进行了鉴定。Leptidea蝴蝶的特点是异染色质含量高、基因组大、染色体重组广泛以及存在隐性物种。我们的研究表明,与其他鳞翅目昆虫相比,satDNA 在鳞翅目昆虫基因组中占有相当大的比例,介于 4.11%-11.05% 之间。satDNAs 的扩增,加上转座元件的过度活跃,促成了 Leptidea 基因组的大幅扩增。通过染色体图谱,我们发现,特别是 LepSat01-100 和 LepSat03-167 satDNAs,它们优先定位于异染色质中,呈现出可变的分布,这可能会影响到该属高度多样化的核型。SatDNAs 还表现出 W 染色体的积累,表明它们参与了性染色体的进化。我们的研究结果有助于深入了解鳞翅目昆虫基因组中 satDNAs 的动态变化,并突出了它们在基因组扩增和染色体组织中的作用,这可能会影响物种的演化过程。重复DNA在鳞翅目昆虫基因组中的高比例突显了该属昆虫复杂的进化动态,揭示了重复DNA与基因组结构之间的相互作用。
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来源期刊
DNA Research
DNA Research 生物-遗传学
CiteScore
6.00
自引率
4.90%
发文量
39
审稿时长
4.5 months
期刊介绍: DNA Research is an internationally peer-reviewed journal which aims at publishing papers of highest quality in broad aspects of DNA and genome-related research. Emphasis will be made on the following subjects: 1) Sequencing and characterization of genomes/important genomic regions, 2) Comprehensive analysis of the functions of genes, gene families and genomes, 3) Techniques and equipments useful for structural and functional analysis of genes, gene families and genomes, 4) Computer algorithms and/or their applications relevant to structural and functional analysis of genes and genomes. The journal also welcomes novel findings in other scientific disciplines related to genomes.
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