Emergence of non-classical genotype constellations of G9P[8] rotavirus strains in diarrheic children in Sabah, Malaysia

IF 2.6 4区 医学 Q3 INFECTIOUS DISEASES Infection Genetics and Evolution Pub Date : 2024-11-01 DOI:10.1016/j.meegid.2024.105685
Siat Yee Fong , Yuki Akari , Lia Natasha Amit , Jecelyn Leaslie John , Abraham Zefong Chin , Satoshi Komoto , Kamruddin Ahmed
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Abstract

G9P[8] has been the predominant rotavirus A (RVA) genotype in Malaysia since the 2000s. However, the overall genetic makeup and evolution of Malaysian G9P[8] strains are still unknown. Therefore, this study aimed to evaluate and characterize the complete genomes of three G9P[8] RVA strains isolated from diarrheic children under five years old in Sabah. Contrary to the classical Wa-like constellation, these strains contained a DS-1-like genotype. Two strains, namely L202 and L234, were genotype G9-P[8]-I1-R1-C1-M1-A1-N1-T1-E2-H1, while one (KN102) was genotype G9-P[8]-I1-R1-C1-M1-A2-N1-T1-E1-H1. Phylogenetic analysis revealed that the NSP4 genes of L202 and L234 strains were closer to that of G9P[8]-E2 strains from Japan, suggesting they might share a common ancestor. The findings from this study provide new insights into the genetic characteristics of circulating G9P[8] strains in Sabah, which are important for rotavirus surveillance and potential vaccine development in the region.
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马来西亚沙巴州腹泻儿童中出现的 G9P[8] 轮状病毒株的非经典基因型组合。
自 2000 年代以来,G9P[8] 一直是马来西亚最主要的轮状病毒 A(RVA)基因型。然而,马来西亚 G9P[8] 株系的整体基因组成和进化情况仍然未知。因此,本研究旨在评估和鉴定从沙巴州五岁以下腹泻儿童中分离出的三种 G9P[8] RVA 株系的完整基因组。与经典的Wa-like星座相反,这些菌株含有DS-1-like基因型。两株菌株(即 L202 和 L234)的基因型为 G9-P[8]-I1-R1-C1-M1-A1-N1-T1-E2-H1,而一株(KN102)的基因型为 G9-P[8]-I1-R1-C1-M1-A2-N1-T1-E1-H1。系统进化分析表明,L202 和 L234 株系的 NSP4 基因与日本的 G9P[8]-E2 株系较为接近,表明它们可能有共同的祖先。这项研究结果为了解沙巴州流行的 G9P[8] 株系的遗传特征提供了新的视角,对该地区的轮状病毒监测和潜在疫苗开发具有重要意义。
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来源期刊
Infection Genetics and Evolution
Infection Genetics and Evolution 医学-传染病学
CiteScore
8.40
自引率
0.00%
发文量
215
审稿时长
82 days
期刊介绍: (aka Journal of Molecular Epidemiology and Evolutionary Genetics of Infectious Diseases -- MEEGID) Infectious diseases constitute one of the main challenges to medical science in the coming century. The impressive development of molecular megatechnologies and of bioinformatics have greatly increased our knowledge of the evolution, transmission and pathogenicity of infectious diseases. Research has shown that host susceptibility to many infectious diseases has a genetic basis. Furthermore, much is now known on the molecular epidemiology, evolution and virulence of pathogenic agents, as well as their resistance to drugs, vaccines, and antibiotics. Equally, research on the genetics of disease vectors has greatly improved our understanding of their systematics, has increased our capacity to identify target populations for control or intervention, and has provided detailed information on the mechanisms of insecticide resistance. However, the genetics and evolutionary biology of hosts, pathogens and vectors have tended to develop as three separate fields of research. This artificial compartmentalisation is of concern due to our growing appreciation of the strong co-evolutionary interactions among hosts, pathogens and vectors. Infection, Genetics and Evolution and its companion congress [MEEGID](http://www.meegidconference.com/) (for Molecular Epidemiology and Evolutionary Genetics of Infectious Diseases) are the main forum acting for the cross-fertilization between evolutionary science and biomedical research on infectious diseases. Infection, Genetics and Evolution is the only journal that welcomes articles dealing with the genetics and evolutionary biology of hosts, pathogens and vectors, and coevolution processes among them in relation to infection and disease manifestation. All infectious models enter the scope of the journal, including pathogens of humans, animals and plants, either parasites, fungi, bacteria, viruses or prions. The journal welcomes articles dealing with genetics, population genetics, genomics, postgenomics, gene expression, evolutionary biology, population dynamics, mathematical modeling and bioinformatics. We also provide many author benefits, such as free PDFs, a liberal copyright policy, special discounts on Elsevier publications and much more. Please click here for more information on our author services .
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