Development of a transformer-based deep learning algorithm for diabetic peripheral neuropathy classification using corneal confocal microscopy images.

IF 4.6 2区 生物学 Q2 CELL BIOLOGY Frontiers in Cell and Developmental Biology Pub Date : 2024-10-14 eCollection Date: 2024-01-01 DOI:10.3389/fcell.2024.1484329
Wenqu Chen, Danling Liao, Yuyang Deng, Jianzhang Hu
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Abstract

Background: Diabetic peripheral neuropathy (DPN) is common and can go unnoticed until it is firmly developed. This study aims to establish a transformer-based deep learning algorithm (DLA) to classify corneal confocal microscopy (CCM) images, identifying DPN in diabetic patients.

Methods: Our classification model differs from traditional convolutional neural networks (CNNs) using a Swin transformer network with a hierarchical architecture backbone. Participants included those with (DPN+, n = 57) or without (DPN-, n = 37) DPN as determined by the updated Toronto consensus criteria. The CCM image dataset (consisting of 570 DPN+ and 370 DPN- images, with five images selected from each participant's left and right eyes) was randomly divided into training, validation, and test subsets at a 7:1:2 ratio, considering individual participants. The effectiveness of the algorithm was assessed using diagnostic accuracy measures, such as sensitivity, specificity, and accuracy, in conjunction with Grad-CAM visualization techniques to interpret the model's decisions.

Results: In the DPN + group (n = 12), the transformer model successfully predicted all participants, while in the DPN- group (n = 7), one participant was misclassified as DPN+, with an area under the curve (AUC) of 0.9405 (95% CI 0.8166, 1.0000). Among the DPN + images (n = 120), 117 were correctly classified, and among the DPN- images (n = 70), 49 were correctly classified, with an AUC of 0.8996 (95% CI 0.8502, 0.9491). For single-image predictions, the transformer model achieved a superior AUC relative to the ResNet50 model (0.8761, 95% CI 0.8155, 0.9366), the Inception_v3 model (0.8802, 95% CI 0.8231, 0.9374), and the DenseNet121 model (0.8965, 95% CI 0.8438, 0.9491).

Conclusion: Transformer-based networks outperform CNN-based networks in rapid binary DPN classification. Transformer-based DLAs have clinical DPN screening potential.

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利用角膜共聚焦显微镜图像开发基于变压器的深度学习算法,用于糖尿病周围神经病变分类。
背景:糖尿病周围神经病变(DPN)是一种常见病,在病情发展到一定程度之前可能会被忽视。本研究旨在建立一种基于变压器的深度学习算法(DLA),对角膜共聚焦显微镜(CCM)图像进行分类,从而识别糖尿病患者的 DPN:我们的分类模型有别于传统的卷积神经网络(CNN),它采用了具有分层架构骨干的Swin变换器网络。参与者包括根据最新多伦多共识标准确定的患有(DPN+,n = 57)或未患有(DPN-,n = 37)DPN 的患者。CCM 图像数据集(包括 570 张 DPN+ 和 370 张 DPN- 图像,从每位参与者的左眼和右眼各选取 5 张图像)按 7:1:2 的比例随机分为训练、验证和测试子集,并考虑到每位参与者的情况。通过灵敏度、特异性和准确性等诊断准确性指标,并结合 Grad-CAM 可视化技术来解释模型的决策,从而评估算法的有效性:在 DPN + 组(n = 12)中,转换器模型成功预测了所有参与者,而在 DPN- 组(n = 7)中,一名参与者被误诊为 DPN+,曲线下面积(AUC)为 0.9405(95% CI 0.8166,1.0000)。在 DPN + 图像(n = 120)中,117 个被正确分类,在 DPN- 图像(n = 70)中,49 个被正确分类,AUC 为 0.8996(95% CI 0.8502,0.9491)。在单幅图像预测方面,变换器模型的 AUC 值优于 ResNet50 模型(0.8761,95% CI 0.8155,0.9366)、Inception_v3 模型(0.8802,95% CI 0.8231,0.9374)和 DenseNet121 模型(0.8965,95% CI 0.8438,0.9491):结论:在快速二元 DPN 分类方面,基于变压器的网络优于基于 CNN 的网络。基于变压器的 DLA 具有临床 DPN 筛选潜力。
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来源期刊
Frontiers in Cell and Developmental Biology
Frontiers in Cell and Developmental Biology Biochemistry, Genetics and Molecular Biology-Cell Biology
CiteScore
9.70
自引率
3.60%
发文量
2531
审稿时长
12 weeks
期刊介绍: Frontiers in Cell and Developmental Biology is a broad-scope, interdisciplinary open-access journal, focusing on the fundamental processes of life, led by Prof Amanda Fisher and supported by a geographically diverse, high-quality editorial board. The journal welcomes submissions on a wide spectrum of cell and developmental biology, covering intracellular and extracellular dynamics, with sections focusing on signaling, adhesion, migration, cell death and survival and membrane trafficking. Additionally, the journal offers sections dedicated to the cutting edge of fundamental and translational research in molecular medicine and stem cell biology. With a collaborative, rigorous and transparent peer-review, the journal produces the highest scientific quality in both fundamental and applied research, and advanced article level metrics measure the real-time impact and influence of each publication.
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