VP-net: an end-to-end deep learning network for elastic wave velocity prediction in human skin in vivo using optical coherence elastography.

IF 4.3 3区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Frontiers in Bioengineering and Biotechnology Pub Date : 2024-10-14 eCollection Date: 2024-01-01 DOI:10.3389/fbioe.2024.1465823
Yilong Zhang, Jinpeng Liao, Zhengshuyi Feng, Wenyue Yang, Alessandro Perelli, Zhiqiong Wang, Chunhui Li, Zhihong Huang
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Abstract

Introduction: Acne vulgaris, one of the most common skin conditions, affects up to 85% of late adolescents, currently no universally accepted assessment system. The biomechanical properties of skin provide valuable information for the assessment and management of skin conditions. Wave-based optical coherence elastography (OCE) quantitatively assesses these properties of tissues by analyzing induced elastic wave velocities. However, velocity estimation methods require significant expertise and lengthy image processing times, limiting the clinical translation of OCE technology. Recent advances in machine learning offer promising solutions to simplify velocity estimation process.

Methods: In this study, we proposed a novel end-to-end deep-learning model, named velocity prediction network (VP-Net), aiming to accurately predict elastic wave velocity from raw OCE data of in vivo healthy and abnormal human skin. A total of 16,424 raw phase slices from 1% to 5% agar-based tissue-mimicking phantoms, 28,270 slices from in vivo human skin sites including the palm, forearm, back of the hand from 16 participants, and 580 slices of facial closed comedones were acquired to train, validate, and test VP-Net.

Results: VP-Net demonstrated highly accurate velocity prediction performance compared to other deep-learning-based methods, as evidenced by small evaluation metrics. Furthermore, VP-Net exhibited low model complexity and parameter requirements, enabling end-to-end velocity prediction from a single raw phase slice in 1.32 ms, enhancing processing speed by a factor of ∼100 compared to a conventional wave velocity estimation method. Additionally, we employed gradient-weighted class activation maps to showcase VP-Net's proficiency in discerning wave propagation patterns from raw phase slices. VP-Net predicted wave velocities that were consistent with the ground truth velocities in agar phantom, two age groups (20s and 30s) of multiple human skin sites and closed comedones datasets.

Discussion: This study indicates that VP-Net could rapidly and accurately predict elastic wave velocities related to biomechanical properties of in vivo healthy and abnormal skin, offering potential clinical applications in characterizing skin aging, as well as assessing and managing the treatment of acne vulgaris.

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VP-net:利用光学相干弹性成像技术预测活体人体皮肤弹性波速度的端到端深度学习网络。
简介寻常痤疮是最常见的皮肤病之一,85%的晚期青少年都会患上这种病,但目前还没有公认的评估系统。皮肤的生物力学特性为皮肤状况的评估和管理提供了宝贵的信息。基于波的光学相干弹性成像(OCE)通过分析诱导弹性波速度来定量评估组织的这些特性。然而,速度估算方法需要大量的专业知识和冗长的图像处理时间,限制了 OCE 技术的临床应用。机器学习的最新进展为简化速度估算过程提供了有前景的解决方案:在这项研究中,我们提出了一个新颖的端到端深度学习模型,名为速度预测网络(VP-Net),旨在从活体健康和异常人体皮肤的原始 OCE 数据中准确预测弹性波速度。为了训练、验证和测试VP-Net,共采集了16,424张来自1%至5%琼脂组织模拟模型的原始相位切片,28,270张来自16名参与者的人体皮肤部位(包括手掌、前臂和手背)的切片,以及580张面部闭合性粉刺切片:结果:与其他基于深度学习的方法相比,VP-Net 表现出了高度准确的速度预测性能,这一点可以从一些小的评估指标中得到证明。此外,VP-Net 的模型复杂度和参数要求都很低,只需 1.32 毫秒就能从单个原始相位切片进行端到端速度预测,与传统的波速估算方法相比,处理速度提高了 100 倍。此外,我们还利用梯度加权类激活图展示了 VP-Net 从原始相位切片中分辨波传播模式的能力。VP-Net 预测的波速与琼脂模型、多个人体皮肤部位的两个年龄组(20 多岁和 30 多岁)以及闭合粉刺数据集中的地面真实波速一致:本研究表明,VP-Net 可以快速准确地预测与体内健康和异常皮肤的生物力学特性相关的弹性波速度,在表征皮肤老化以及评估和管理痤疮治疗方面具有潜在的临床应用价值。
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来源期刊
Frontiers in Bioengineering and Biotechnology
Frontiers in Bioengineering and Biotechnology Chemical Engineering-Bioengineering
CiteScore
8.30
自引率
5.30%
发文量
2270
审稿时长
12 weeks
期刊介绍: The translation of new discoveries in medicine to clinical routine has never been easy. During the second half of the last century, thanks to the progress in chemistry, biochemistry and pharmacology, we have seen the development and the application of a large number of drugs and devices aimed at the treatment of symptoms, blocking unwanted pathways and, in the case of infectious diseases, fighting the micro-organisms responsible. However, we are facing, today, a dramatic change in the therapeutic approach to pathologies and diseases. Indeed, the challenge of the present and the next decade is to fully restore the physiological status of the diseased organism and to completely regenerate tissue and organs when they are so seriously affected that treatments cannot be limited to the repression of symptoms or to the repair of damage. This is being made possible thanks to the major developments made in basic cell and molecular biology, including stem cell science, growth factor delivery, gene isolation and transfection, the advances in bioengineering and nanotechnology, including development of new biomaterials, biofabrication technologies and use of bioreactors, and the big improvements in diagnostic tools and imaging of cells, tissues and organs. In today`s world, an enhancement of communication between multidisciplinary experts, together with the promotion of joint projects and close collaborations among scientists, engineers, industry people, regulatory agencies and physicians are absolute requirements for the success of any attempt to develop and clinically apply a new biological therapy or an innovative device involving the collective use of biomaterials, cells and/or bioactive molecules. “Frontiers in Bioengineering and Biotechnology” aspires to be a forum for all people involved in the process by bridging the gap too often existing between a discovery in the basic sciences and its clinical application.
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