Insights into the Binding of Metadoxine with Bovine Serum Albumin: A Multi-Spectroscopic Investigation Combined with Molecular Docking.

IF 1.9 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Current protein & peptide science Pub Date : 2024-10-28 DOI:10.2174/0113892037318575240919054053
Harman Deep Kour, Apoorva Pathania, Anu Radha Pathania
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Abstract

Background: Metadoxine, also known as pyruvate dehydrogenase activator, is a small molecule drug that has been used in the treatment of various medical conditions. Bovine serum albumin is a commonly studied protein that serves as a plasmatic for understanding protein-drug interactions due to its abundance.

Objective: This research suggests that metadoxine can bind to bovine serum albumin with moderate affinity, leading to an alteration in the secondary structure of the protein, which may also influence the protein's stability and function, which could provide a comprehensive understanding of the interaction at a molecular level. In this study, a variety of methodologies wereused to determine various thermodynamic parameters.

Methods: The study uses UV-visible, Fluorescence, Fourier-transform infrared, Circular dichroism spectroscopy, and Molecular docking to analyze the interaction between bovine serum albumin and metadoxine, providing thermodynamic parameters for understanding the protein structure and its binding.

Result: The binding of metadoxine with bovine serum albumin, causes a hyperchromic shift. In fluorescence spectroscopy, the value of the Stern Volmer increases constantly with an increase in temperature, suggesting a stronger interaction between the Metadoxine and the Bovine serum albumin, leading to dynamic quenching. Additionally, Fourier-transform infrared and circular dichroism indicated a reduction in the secondary structure of Bovine serum albumin.

Conclusion: The interactions between metadoxine and bovine serum albumin, cause hyperchromic shift revealed by UV-visible spectroscopy, whereas in Fluorescence spectroscopy, the value of the Stern Volmer constant increases with an increase in temperature, suggesting a stronger interaction between the MD and the BSA, leading to dynamic quenching. Additionally, Fourier-transform infrared and circular dichroism spectroscopy indicated a reduction in the secondary structure of the protein, as evidenced by the shifting of the amide II band and leading to a slight decrease in the αhelix content. The molecular docking shows that metadoxine was docked in the subdomain IIA binding pocket of BSA.

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揭示美他多辛与牛血清白蛋白的结合:结合分子对接的多光谱研究。
背景:美他多辛又称丙酮酸脱氢酶激活剂,是一种小分子药物,已被用于治疗多种疾病。牛血清白蛋白是一种常被研究的蛋白质,由于其含量丰富,可作为了解蛋白质与药物相互作用的质体:本研究表明,美他多辛能够以中等亲和力与牛血清白蛋白结合,导致蛋白质二级结构的改变,这也可能会影响蛋白质的稳定性和功能,从而在分子水平上全面了解这种相互作用。本研究采用多种方法测定各种热力学参数:方法:本研究采用紫外可见光、荧光、傅立叶变换红外光谱、圆二色光谱和分子对接等方法分析牛血清白蛋白与美他多辛的相互作用,为理解蛋白质结构及其结合提供热力学参数:结果:美他多辛与牛血清白蛋白结合后会产生高色素偏移。在荧光光谱中,斯特恩-沃尔默的值随着温度的升高而不断增加,这表明美他多辛与牛血清白蛋白之间的相互作用更强,从而导致动态淬灭。此外,傅立叶变换红外光谱和圆二色光谱显示,牛血清白蛋白的二级结构有所降低:结论:紫外可见光谱显示,偏二甲肼与牛血清白蛋白之间的相互作用会导致高色度偏移,而在荧光光谱中,斯特恩-沃尔默常数的值会随着温度的升高而增加,这表明 MD 与牛血清白蛋白之间的相互作用更强,从而导致动态淬灭。此外,傅立叶变换红外光谱和圆二色性光谱显示,蛋白质的二级结构减少,表现为酰胺 II 带的移动,导致 α 螺旋含量略有减少。分子对接显示,美他多辛与 BSA 的子域 IIA 结合袋对接。
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来源期刊
Current protein & peptide science
Current protein & peptide science 生物-生化与分子生物学
CiteScore
5.20
自引率
0.00%
发文量
73
审稿时长
6 months
期刊介绍: Current Protein & Peptide Science publishes full-length/mini review articles on specific aspects involving proteins, peptides, and interactions between the enzymes, the binding interactions of hormones and their receptors; the properties of transcription factors and other molecules that regulate gene expression; the reactions leading to the immune response; the process of signal transduction; the structure and function of proteins involved in the cytoskeleton and molecular motors; the properties of membrane channels and transporters; and the generation and storage of metabolic energy. In addition, reviews of experimental studies of protein folding and design are given special emphasis. Manuscripts submitted to Current Protein and Peptide Science should cover a field by discussing research from the leading laboratories in a field and should pose questions for future studies. Original papers, research articles and letter articles/short communications are not considered for publication in Current Protein & Peptide Science.
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