Elucidating macrophage scavenger receptor 1's mechanistic contribution as a shared molecular mediator in obesity and thyroid cancer pathogenesis via bioinformatics analysis.

IF 2.8 3区 生物学 Q2 GENETICS & HEREDITY Frontiers in Genetics Pub Date : 2024-10-22 eCollection Date: 2024-01-01 DOI:10.3389/fgene.2024.1483991
Fangjian Shang, Zhe Xu, Haobo Wang, Bin Xu, Ning Li, Jiakai Zhang, Xuan Li, Zhen Zhao, Xi Zhang, Bo Liu, Zengren Zhao
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Abstract

Introduction: Obesity is a disease characterized by the excessive accumulation of fat. Concurrently, thyroid carcinoma (THCA) stands as the foremost endocrine malignancy. Despite the observed escalation in concurrent prevalence of both conditions, the underlying interconnections remain elusive. This indicates the need to identify potential biomarkers to predict the pathways through which obesity and THCA coexist.

Methods: The study employed a variety of methods, including differential gene expression analysis, Weighted Gene Co-expression Network Analysis (WGCNA), and gene enrichment analysis. It was also supplemented with immunohistochemical data from the Human Protein Atlas (HPA), advanced machine learning techniques, and related experiments such as qPCR, to identify important pathways and key genes shared between obesity and THCA.

Results: Through differential gene expression analysis, WGCNA, and machine learning methods, we identified three biomarkers (IL6R, GZMB, and MSR1) associated with obesity. After validation analysis using THCA-related datasets and biological experiments, we selected Macrophage Scavenger Receptor 1 (MSR1) as a key gene for THCA analysis. The final analysis revealed that MSR1 is closely related to the degree of immune cell infiltration in patients with obesity and THCA, suggesting that this gene may be a potential intervention target for both obesity and THCA.

Discussion: Our research indicates that MSR1 may influence the occurrence and development of obesity and THCA by regulating the infiltration level of immune cells. This lays the foundation for future research on targeted therapies based on their shared mechanisms.

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通过生物信息学分析,阐明巨噬细胞清道夫受体1作为肥胖症和甲状腺癌发病机制中的共同分子介质的机理贡献。
导言肥胖症是一种以脂肪过度堆积为特征的疾病。同时,甲状腺癌(THCA)也是最主要的内分泌恶性肿瘤。尽管已观察到这两种疾病的并发率在不断上升,但其潜在的内在联系仍然难以捉摸。这表明有必要确定潜在的生物标志物,以预测肥胖和 THCA 并存的途径:研究采用了多种方法,包括差异基因表达分析、加权基因共表达网络分析(WGCNA)和基因富集分析。研究还辅以人类蛋白质图谱(HPA)中的免疫组化数据、先进的机器学习技术以及 qPCR 等相关实验,以确定肥胖症与 THCA 共存的重要通路和关键基因:通过差异基因表达分析、WGCNA和机器学习方法,我们发现了三个与肥胖相关的生物标记物(IL6R、GZMB和MSR1)。在使用 THCA 相关数据集和生物实验进行验证分析后,我们选择了巨噬细胞清道夫受体 1(MSR1)作为 THCA 分析的关键基因。最终分析结果显示,MSR1与肥胖症和THCA患者的免疫细胞浸润程度密切相关,这表明该基因可能是肥胖症和THCA的潜在干预靶点:我们的研究表明,MSR1 可能通过调节免疫细胞的浸润水平来影响肥胖症和 THCA 的发生和发展。讨论:我们的研究表明,MSR1 可能通过调节免疫细胞的浸润水平来影响肥胖症和 THCA 的发生和发展,这为今后根据它们的共同机制研究靶向疗法奠定了基础。
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来源期刊
Frontiers in Genetics
Frontiers in Genetics Biochemistry, Genetics and Molecular Biology-Molecular Medicine
CiteScore
5.50
自引率
8.10%
发文量
3491
审稿时长
14 weeks
期刊介绍: Frontiers in Genetics publishes rigorously peer-reviewed research on genes and genomes relating to all the domains of life, from humans to plants to livestock and other model organisms. Led by an outstanding Editorial Board of the world’s leading experts, this multidisciplinary, open-access journal is at the forefront of communicating cutting-edge research to researchers, academics, clinicians, policy makers and the public. The study of inheritance and the impact of the genome on various biological processes is well documented. However, the majority of discoveries are still to come. A new era is seeing major developments in the function and variability of the genome, the use of genetic and genomic tools and the analysis of the genetic basis of various biological phenomena.
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